Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0605 ATGTGTTCTAAAGTATCAGTAGTTCCAAGCTCTTTGGATGTGGCTCGAAGGTCTGCCCAATTTGAAGCTAGTGTTTGGGGAGATTACTTTCTTTCCTATCATTCTCTTCCTCCAGAACAAGCCAACAAGTCGACGGAGAGACAGATGGAAGAATTGAAAGAAGAAATAAAAAGTCAGTTACTGATTACTACAACAAAAGATAACATTGAGAAATTAAAACTCATCGATTCAATTCAACGCTTAGGCGTTTCTTACCATTTCGAAACTGAGATCCACAAAGTTCTTCAACAACTTTATCATAATATTGCTCAACATGATAATGACCTTCACACTATGACTCTCCGATTCAGACTTCTTAGGCAACAAGGCTACAACATATCATCCCAGCCTTTCGATAAGTTTCGAGGCAAATGGGGAAGTTCATATAATAACAATAATGTAGAAGAACTCTTGAGTTTATACGAAGCATCGCAATTGAGGATGCGAGGAGAGGAAGCATTGGACGAAGCATTTTGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCGGAGACTCTGCCACCGATACAACGGTTGCAGCGGAAGTTCGCCGTGCTTTGAAGTGGCCGCTGTACAAGAATCTGCCAAGGCTTGAAGCCAGACACTACATTGGTTTGTTCAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGAATTTCAACCAATTGCAAAAACTTCATCAGAAAGAGATTGCTTACATCTCAAAGTGGTGGGAAGATTATGGATTTGCAGAAAAGCTATCATTTGCAAGGAACAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTAAACCTCAATTTTTAAGTGCCAGACTTATTATGACCAAAATCGTTGCTATTGGGTCAATGTTAGATGATATTTATGATGTTTATGGCACATTTGAAGAACTCAAACTCTTGACCCTTGCACTTGAGAGATGGGACAAGAGTGAGACAGACCAACTCCCAAATTATATGAAGATGTACTACGAGGCTTTGTTGGATGTTTTCGAAGAAATTGAAGAAGAAATGAGGCAGCAGAAAACAACACCATTTTGCATCCATCACATGAAAGAAGCGACAGAAGAGTTAGGAAGGGTATTTTTGGTAGAGGCAAAATGGTGTAAGGAAGGATACACACCAACTATGGAAGAATACTTGGATATTGCTTTGACATCTTTTGGCCACAAATTGCTTATGGTAACAGCCCTTTTGGGAATGGGAGATTTGGCCACACAACATGCTGTTCAATGGCTCATCTCCATGCCTAATATTCTCAAGGCCTCCACTGTTATTTGTAGGCTCATGAACGGCATCGTTTCGCATAAGTTTGAACAAGAACGAGATCATGTGGCTTCTGCAATTGAATGCTACATGGAACAGAATCGCACGTTGGAATACGATGCTCTAAATGCATTACACAAACAAATTGATGATTCGTGGAAGGATATGGTTGAGAATTTTTGTGTTATCACCACAGAAAATCAGATTCCAAGGGCTGTTCTTATGAGAGTTTTGAACCTCACAAGATTATTTAATGTGATTTACAAAGATGGAGATGGTTATACGCAATCTCAAGGCTCCACAAAAACTCATATAAAATCTTTGCTTGTAGACTCTGTCCCACTCTAA 1671 39.74 MCSKVSVVPSSLDVARRSAQFEASVWGDYFLSYHSLPPEQANKSTERQMEELKEEIKSQLLITTTKDNIEKLKLIDSIQRLGVSYHFETEIHKVLQQLYHNIAQHDNDLHTMTLRFRLLRQQGYNISSQPFDKFRGKWGSSYNNNNVEELLSLYEASQLRMRGEEALDEAFCFATAQLEAIVGDSATDTTVAAEVRRALKWPLYKNLPRLEARHYIGLFSEKPWRNESLLNFAKMNFNQLQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFKPQFLSARLIMTKIVAIGSMLDDIYDVYGTFEELKLLTLALERWDKSETDQLPNYMKMYYEALLDVFEEIEEEMRQQKTTPFCIHHMKEATEELGRVFLVEAKWCKEGYTPTMEEYLDIALTSFGHKLLMVTALLGMGDLATQHAVQWLISMPNILKASTVICRLMNGIVSHKFEQERDHVASAIECYMEQNRTLEYDALNALHKQIDDSWKDMVENFCVITTENQIPRAVLMRVLNLTRLFNVIYKDGDGYTQSQGSTKTHIKSLLVDSVPL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8062088 8070220 - ClG42_10g0060500.10 Clacu10g0605 259229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0605 556 Coils Coil 42 62 - -
Clacu10g0605 556 PANTHER OS04G0344100 PROTEIN-RELATED 22 535 - -
Clacu10g0605 556 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 222 IPR008930 -
Clacu10g0605 556 Gene3D Farnesyl Diphosphate Synthase 24 544 IPR008949 -
Clacu10g0605 556 SFLD Terpene Cyclase Like 1 C Terminal Domain 226 554 IPR034741 -
Clacu10g0605 556 SUPERFAMILY Terpenoid synthases 225 556 IPR008949 -
Clacu10g0605 556 Pfam Terpene synthase family, metal binding domain 257 496 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu10g0605 556 SFLD Isoprenoid Synthase Type I 226 554 - -
Clacu10g0605 556 FunFam Isoprene synthase, chloroplastic 217 544 - -
Clacu10g0605 556 CDD Terpene_cyclase_plant_C1 16 552 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Clacu10g0605 556 Gene3D - 66 225 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu10g0605 556 Coils Coil 343 363 - -
Clacu10g0605 556 Pfam Terpene synthase, N-terminal domain 25 199 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0605 K15803 - - csv:101211540 899.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0605 Clacu-Chr10:8062088 Clacu10g0608 Clacu-Chr10:8207261 1.10E-132 dispersed
Clacu10g0605 Clacu-Chr10:8062088 Clacu10g0606 Clacu-Chr10:8112131 2.20E-122 tandem
Clacu09g2307 Clacu-Chr9:37746332 Clacu10g0605 Clacu-Chr10:8062088 2.10E-34 transposed
Clacu10g0605 Clacu-Chr10:8062088 Clacu03g0522 Clacu-Chr3:5406801 2.60E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25