Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0608 ATGTCTTCTCAAGTTCCAAATTCTCCTGCTTCAATTATGAAGGCCAATGACATTCCTAATATTAAGCGTTCTATTGCAAATTTTCATCCTAGTATTTGGAATGATCATTTCCTTTCATTCTCCTTTGATGATGCATTGAAGGTAGATGATGAAATGAAAGAAGGATCAGTTGAAAAGTTGAAAGAAGAAATAAGGATGATGGTGGTTGCTTCTGAGGGAAATCCAATGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACCAAGTTTTAGAACACATATATATGTCTTATTCCATTTTATTAACTAAAGATAGTGGTGAAGATCTTCATACTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGACAAGAATGGAAAATTTAAAGAATCATTGGGTGAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAATTTCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGACAGTATTTGGCAATATACCAACAACATCCTTCACACAATGAGACTTTGCTTAAATTCTCAAAACTAGACTTCAACATATTACAAAGACTTCACCAGAAAGAGTTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAAAGTCCCAACAAAATTTCCTTTTGCAAGAGATAGAATTGTGGAGTGCTACTTTTGGACATTGGGATCATACTTCGAACCTCATTTAAGTGTTGGAAGGAAAATGTTAACCAAAGTAATCGCAATTTCTTCAATTTTAGATGATATATATGATGCCTATGGAACATTTGAAGAACTTCAAGTCCTCACTCCAGCAATTCAAAGGTGGGATAGAAGCATGGTGCATATACTCCCTGAGTACATGAAACCTTTTTATGTAGCAATGTTAGATCTTTATGAGGAAATTAGCAAAGAGATAGGCAAGGATGAAAGTTCACTCCACCTTCAAATTGCAATAGGAGGAATGAAAAAGCTAGCTGAATCCTACTTTAAAGAAGCTAAATGGTTAAACAAAAAGTATAAACCAAACTTTAAGGAGTACATGGACTTGGCATTAAGTACCACAGGTTATCCCATGCTTATAACTATTTCATTTCTCGGAATGGGTGACATTGTTACAAACGAGGTACTTGAATGGCTTTCTAAAGGACCTCAAATTATTAAAGCCTCAACAATCATTTGTAGACTCATGGATGATATCGTTTCCCGCAAGTTTGAGCAAGAAAGGGAACATGTTGCTTCTGCTGTTGAATGTTACATGGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACACAAATGAAGCATGTCTTCACCCAATCGCTGTTCCAATGCCTATTCTAATGCGTGTAGTGAATTTTTCAAGAGTTATGAACTTGCTTTATTTGGATGAAGATGGATACACAAATGCCAGGAGTGAAACAAAATCTCTTATCAAATCTCTTCTTGTACACCCAATGCCTTATTAA 1698 35.98 MSSQVPNSPASIMKANDIPNIKRSIANFHPSIWNDHFLSFSFDDALKVDDEMKEGSVEKLKEEIRMMVVASEGNPMEKLKLVDSIQRLGVSYHFENEIDQVLEHIYMSYSILLTKDSGEDLHTTALLFRLLRQQGYKISCDIFSKLMDKNGKFKESLGEDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVRNALKFPIRKGVPRIKTRQYLAIYQQHPSHNETLLKFSKLDFNILQRLHQKELSEICRWWKDLKVPTKFPFARDRIVECYFWTLGSYFEPHLSVGRKMLTKVIAISSILDDIYDAYGTFEELQVLTPAIQRWDRSMVHILPEYMKPFYVAMLDLYEEISKEIGKDESSLHLQIAIGGMKKLAESYFKEAKWLNKKYKPNFKEYMDLALSTTGYPMLITISFLGMGDIVTNEVLEWLSKGPQIIKASTIICRLMDDIVSRKFEQEREHVASAVECYMEQYGCSEEEACVELHKQVVDAWKDTNEACLHPIAVPMPILMRVVNFSRVMNLLYLDEDGYTNARSETKSLIKSLLVHPMPY 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8207261 8220684 + ClG42_10g0060800.10 Clacu10g0608 259232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0608 565 CDD Terpene_cyclase_plant_C1 23 562 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Clacu10g0608 565 Gene3D Farnesyl Diphosphate Synthase 30 553 IPR008949 -
Clacu10g0608 565 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 238 IPR008930 -
Clacu10g0608 565 Pfam Terpene synthase family, metal binding domain 269 508 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu10g0608 565 FunFam Isoprene synthase, chloroplastic 216 553 - -
Clacu10g0608 565 FunFam Isoprene synthase, chloroplastic 73 238 - -
Clacu10g0608 565 PANTHER OS04G0344100 PROTEIN-RELATED 27 562 - -
Clacu10g0608 565 Gene3D - 73 238 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu10g0608 565 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 563 IPR034741 -
Clacu10g0608 565 SFLD Isoprenoid Synthase Type I 238 563 - -
Clacu10g0608 565 Pfam Terpene synthase, N-terminal domain 32 212 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu10g0608 565 SUPERFAMILY Terpenoid synthases 238 564 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0608 K15803 - - csv:101211452 900.968
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0605 Clacu-Chr10:8062088 Clacu10g0608 Clacu-Chr10:8207261 1.10E-132 dispersed
Clacu10g0606 Clacu-Chr10:8112131 Clacu10g0608 Clacu-Chr10:8207261 7.70E-194 dispersed
Clacu10g0607 Clacu-Chr10:8179980 Clacu10g0608 Clacu-Chr10:8207261 7.20E-270 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337