Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0613 ATGGACTCTTTCTCTCCAGCATTTCTGGCCTTTAACTTTCTCCTTTATCTCTTCACCTATGTAGCTGCCACTGATTCCTTAACTGCTCAAAACCCATTTCTCAGAGATGGCTTTAGTCTGGTCTCCAAAAATGGAAATTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAATAGGAAAACGCCAATTAATGACTCATCTGGTGTACTGATGATGAACCTTACACCAGGAAATCTTATACTCTATAGCCATAATTCCACCGCCACCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAGTCCCCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAACTACTCGTGGCAAAGTTTTGATTACCCTACTGACACTCTTTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATAAATAGAAGATTAGATGCTTGGAAAAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTATGAGAGTCACTAGTAGACCACTGGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAAGATGAAGTTTACTACCAATACTCTGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCAGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTAAACAAAAGCATGAATCTTGAGGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAAGATTTATATGTCAAAATGCTTGTATCAGAATTAGTCAAGCGTAGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATATCTTTGGTTGTGATTGTTGCCAGTTTCAGTTTGGCTATCCTCTTCATATGCTTATACACTTTCAAAAAGAGATCAACCGTCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTATTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTCTCGATTGATAATAAGTTGGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATGAACGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAGTTATTAGACTGGTCACAACGATACCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTCGATTGAGGATTATACATAGAGATTTAAAAGCTAGTAATGTGTTACTTGATATGGATATGAATCCGAAAATCTCTGATTTTGGTTTGGCTAAAACTTGCGGTGGAGATCAAACTGAAGGACGAACGATAAAAGTGGTCGGAACTTACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAAGTTTCTGCCACTTGAATGACCAAAATCTCATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATTGACAACGCCATTCGAGAAACATGCATTATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTCCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAGAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGGCGCAAAGAAGTTTCCAACTACTCCATGGATTTTCTTCTTGATCTCTTTGAACACCAAATTCCCTATTTCTGCAAATTTGGGAATGAAGACCAAGGTAAAGGCCAAAGTACCGATTCTTATAGTACTGTTCGAGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGTTGTTCACCTAAACCCGAGGCTATTATAGATGCTATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGAAACTAATCAAGCTCTGTTTAATCTCCTAGAAGCGGAAGCTGAATTAGTTGTAGGCTATAATGTAGAATATGCGCGGGATGTGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCTGGGGCTCCAGGTTAGAGACATGTCACTTAGTTTGGGGGCCTTCCTTATTGACTGA 2937 40.69 MDSFSPAFLAFNFLLYLFTYVAATDSLTAQNPFLRDGFSLVSKNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLMMNLTPGNLILYSHNSTATIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGMRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLVSELVKRREAHKTERLNPKVKISLVVIVASFSLAILFICLYTFKKRSTVKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDVAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKEGNPEELIDNAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPRRKEVSNYSMDFLLDLFEHQIPYFCKFGNEDQGKGQSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSPVIRVRLSWRKSRYETNQALFNLLEAEAELVVGYNVEYARDVILNSPLLAEANVLGLQVRDMSLSLGAFLID 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8300398 8312352 - ClG42_10g0061300.10 Clacu10g0613 259237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0613 978 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Clacu10g0613 978 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0613 978 SUPERFAMILY HydA/Nqo6-like 852 902 - -
Clacu10g0613 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
Clacu10g0613 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0613 978 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 857 891 IPR006137 GO:0051536(InterPro)
Clacu10g0613 978 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 786 - -
Clacu10g0613 978 Gene3D - 19 152 IPR036426 -
Clacu10g0613 978 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Clacu10g0613 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Clacu10g0613 978 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Clacu10g0613 978 CDD PAN_AP_plant 341 422 - -
Clacu10g0613 978 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0613 978 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Clacu10g0613 978 Gene3D - 840 919 - -
Clacu10g0613 978 SUPERFAMILY Protein kinase-like (PK-like) 487 781 IPR011009 -
Clacu10g0613 978 SMART ntp_6 344 423 IPR003609 -
Clacu10g0613 978 CDD STKc_IRAK 508 772 - -
Clacu10g0613 978 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0613 978 Pfam D-mannose binding lectin 73 181 IPR001480 -
Clacu10g0613 978 Pfam PAN-like domain 344 409 IPR003609 -
Clacu10g0613 978 SMART blect_4 31 155 IPR001480 -
Clacu10g0613 978 CDD B_lectin 34 155 IPR001480 -
Clacu10g0613 978 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Clacu10g0613 978 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 152 - -
Clacu10g0613 978 Gene3D Phosphorylase Kinase; domain 1 464 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0541 Clacu-Chr3:5628193 Clacu10g0613 Clacu-Chr10:8300398 9.90E-179 dispersed
Clacu03g1224 Clacu-Chr3:23527242 Clacu10g0613 Clacu-Chr10:8300398 2.20E-11 dispersed
Clacu05g1668 Clacu-Chr5:25126069 Clacu10g0613 Clacu-Chr10:8300398 9.40E-271 dispersed
Clacu07g0600 Clacu-Chr7:9460817 Clacu10g0613 Clacu-Chr10:8300398 1.60E-80 dispersed
Clacu10g0613 Clacu-Chr10:8300398 Clacu09g0211 Clacu-Chr9:1938649 6.70E-122 dispersed
Clacu10g0613 Clacu-Chr10:8300398 Clacu10g0614 Clacu-Chr10:8321310 0.00E+00 tandem
Clacu03g0546 Clacu-Chr3:5671952 Clacu10g0613 Clacu-Chr10:8300398 2.30E-23 transposed
Clacu05g1936 Clacu-Chr5:28575156 Clacu10g0613 Clacu-Chr10:8300398 9.70E-10 transposed
Clacu10g0613 Clacu-Chr10:8300398 Clacu03g0531 Clacu-Chr3:5525118 2.20E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73869 PF07714 PK_Tyr_Ser-Thr 1.90E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0613 - - - 0.0