Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0614 ATGATTAAGGTTTATGGTCAACCGGGAAATTTTCTAGAAGGGGTATGGTTTAGCATTATCACGGTAGCGGAAATCAAGTGGTCACCACAGCTGACTGCTGCCGTTCATACCAACCAACTCCACTCAAAAACCGCACAATTTCCTTGTCAATGCCCTCTTTGTCAAAGAAGAAAAAGCAAGTCACTCATCGTTTTCCTTTTGTCTCTTGCTGTCTCCGATTCCTTAACGGCTCAAAACCCGTATCTCAGAGATGGCCTTACTCTGGTCTCTAGAAATGGAATCTTCGAATTGGGTTTCTTCAGTTCTGGACTTCCCGCCAACCGTTACTTGGGAATCTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAACCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAACGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGGAATAGGGAAGATGAAGATCCGCGAAACTATTCCTGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATCAATATCCCGAGACTGTCATGTGGAATGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCCAATTATGTGCGCATATTGTACTTGTGGTCTGCAGCTGAAAGACGATGGAGAGTTTACACTTCATTACCAAGAGATAACTGTGACAATTATGCCCTGTGTGGCCCCTATGGATATTGTGATATAAGAGTCACCCCATCTTGTTTATGTCTAGAAGGGTTCAAGCCAAGATCACCTGATAGTTGGGAGGCCGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGTTGAAATTGCCAGACACTAAGTATACTTGGGTCAACAAAAGCATGAATCTTGAGGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTATGGCTTATGCAGTGACAAATGTCAGTGGCAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTGGCATCAGAATTAGTCAAGCATGGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATTGCTTTGTTTGTGATTTCCGGTTTAGGTTTGGCTATCCTCTTCATAGGCATAGGCGTATACATTTTCAAGAAGCGATCAACCTTCAAAGATGAACAAGAGAAAATAGAAGATCAAGACCTAGAGCTTCCCTTGTTTGATCTATCCTTGATTAATAGTGCCACAGATAACTTCTCACATAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAAGGAACGAATGAGTTTAAGAATGAAGTGATCCTGATCGCAAAACTGCAACATCGAAACCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCAAACACAACGTCAATTATTAAATTGGTCAAAACGGTACCAAATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTAGATATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGGGATCAAACTGGAGGAAGAACCTTAAGAGTGGTCGGAACTTACGGATATATGGCACCAGAGTATGCTTTTGATGGACAATTCTCGGTGAAATCTGATGCTTTTAGTTATGGCATTTTGCTGCTGGAGATCATTAGTGGGAAAAGAAGTAGAACTTTCTGCCATTTGAATGACCAAAATCTAATAGCATATGCATGGCGATTGTGGAAAGAAGGAAATATAGAAGAATTGATCGACGATGCCATTCGAGAAACATGCAGCCTTTCGGAGGTACTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCAAATGATCGACCCACAATGTCATTGGTGGTTATGATGTTAGGTTGTGAAATTCCTTTGTCGCAACCGAAACAACCCGGATTTTTCATAGAAAATGAAAAAGCCATTGCAATGAAAAGAGGCTCAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGGTAA 2604 41.47 MIKVYGQPGNFLEGVWFSIITVAEIKWSPQLTAAVHTNQLHSKTAQFPCQCPLCQRRKSKSLIVFLLSLAVSDSLTAQNPYLRDGLTLVSRNGIFELGFFSSGLPANRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNREDEDPRNYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGDLSWRMELHQYPETVMWNGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAERRWRVYTSLPRDNCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWEAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKYTWVNKSMNLEECKQKCLRNCSCMAYAVTNVSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKHGEAHKTERLNPKVKIALFVISGLGLAILFIGIGVYIFKKRSTFKDEQEKIEDQDLELPLFDLSLINSATDNFSHNNKLGEGGFGPVYKGKLTNGQDVAVKRLSQSSGQGTNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDQTQRQLLNWSKRYQIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNIEELIDDAIRETCSLSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCEIPLSQPKQPGFFIENEKAIAMKRGSSKDKSTSTNELTITLPDPR 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8321310 8326326 - ClG42_10g0061400.10 Clacu10g0614 259238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0614 867 CDD PAN_AP_plant 388 469 - -
Clacu10g0614 867 Pfam S-locus glycoprotein domain 261 368 IPR000858 GO:0048544(InterPro)
Clacu10g0614 867 CDD STKc_IRAK 556 820 - -
Clacu10g0614 867 MobiDBLite consensus disorder prediction 848 867 - -
Clacu10g0614 867 SUPERFAMILY Protein kinase-like (PK-like) 532 820 IPR011009 -
Clacu10g0614 867 ProSiteProfiles Protein kinase domain profile. 550 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0614 867 PIRSF SRK 54 867 IPR024171 GO:0004674(InterPro)
Clacu10g0614 867 PIRSF SRK 3 47 IPR024171 GO:0004674(InterPro)
Clacu10g0614 867 Gene3D Hepatocyte Growth Factor 387 466 - -
Clacu10g0614 867 SMART serkin_6 550 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0614 867 MobiDBLite consensus disorder prediction 846 867 - -
Clacu10g0614 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 515 625 - -
Clacu10g0614 867 SMART ntp_6 391 470 IPR003609 -
Clacu10g0614 867 SMART blect_4 79 202 IPR001480 -
Clacu10g0614 867 ProSiteProfiles PAN/Apple domain profile. 390 471 IPR003609 -
Clacu10g0614 867 Pfam PAN-like domain 391 456 IPR003609 -
Clacu10g0614 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 122 233 IPR036426 -
Clacu10g0614 867 Gene3D Transferase(Phosphotransferase) domain 1 626 827 - -
Clacu10g0614 867 ProSiteProfiles Bulb-type lectin domain profile. 73 196 IPR001480 -
Clacu10g0614 867 CDD B_lectin 81 202 IPR001480 -
Clacu10g0614 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 671 683 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0614 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 626 828 - -
Clacu10g0614 867 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 63 834 - -
Clacu10g0614 867 Gene3D Phosphorylase Kinase; domain 1 512 625 - -
Clacu10g0614 867 Gene3D - 68 199 IPR036426 -
Clacu10g0614 867 Pfam Protein tyrosine and serine/threonine kinase 553 818 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0614 867 Pfam D-mannose binding lectin 121 228 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0614 Clacu-Chr10:8321310 Clacu09g0211 Clacu-Chr9:1938649 4.00E-118 dispersed
Clacu10g0613 Clacu-Chr10:8300398 Clacu10g0614 Clacu-Chr10:8321310 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73870 PF07714 PK_Tyr_Ser-Thr 1.30E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0614 - - - 0.0