Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0627 ATGGCCACCACCTCCGACACATCCGACCATGAACAATTAGAAGAAGAAGAATCAGAAGAAGAGCCGTCCAACGGTGGGTTCTGCCGGAGCCTATACGGAGTCGGCTCAGTTCTTGACCCGACAACCAAATGGGTCCGAGAATGGAACCGTGTCTTCCTCCTCGTCTGCGCGGCGGGGCTGTTCGTCGACCCTCTCTTTCTCTACACGCTATCGATAAGCGAGTCTTGGACGTGCGTCTTTATCGATGGATGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCTTTGCACCTTTGGAACATCTGGCTCCAGCTCAAGACTGCCACAAGGTCCTCCTTTTCCGGTAGCAGCGGCGGTGATGTGACGGCCGAAAATAGAGGCCTTAGAGATACCACTCCACGCGCCGTCGCTCTCCGGTATTTCAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCCATTCCTCAGGTTGTATTATGGGTTGTAATTCCTAGAATAATGAAAGAAGGAAGAGTGACATTGGTGATGACAGTATTATTAATAGTATTTTTGTTTCAATATTTGCCAAAATTATACCATTCCGTTTGCTTGTTGCGGCGCCTCCAAAACCTATCTGGCTACATATTCGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGAGCATGTTGGTATCTATTGGGGGTACAAAGAGCAGCAAAATGCTTAAAAGAGCAATGCGGAGCAAGAAGCAACAGCTGTGGAGTTAGATTGCTATCATGCAAAGACCCAATTTTCTATGGAGCAAATAATATGGGAATAGGGAGAGACAGAGGGAGATTTGATTGGGCAAACAACAGGCAAATAAAGTTAATGTGTTTGGATACTTCTGATAACTATGATTATGGAGCTTACAAATGGACTGTTCAGCTTGTTATCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAAAGCACCACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTTCTCACCAGTGGACTCCTATTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGATTCCGGCAGCGTGTGCGAAACTACGAGCGGCAGCGGTGGGCAGCGATGCGAGGTGTGGACGAGTGCGAGATGATAAAAAACCTGCCGGAAGGGCTGCGGCGAGACATAAAGTATCACCTTTGCTTGGATTTGGTTAGGCAGGTGCCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACTATAACAAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTTGTGAGAGGGCATCTCCAAAGCAGCCAAGTGTTACGCGACGGCGTACAAAGTTGTTGCATGTTAGGCCCAGGCAACTTCAGTGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATTGAGCGCCTTCCCCCCTCCTCCTGCACTCTTGTCACACTCGAGACCACCGAGGCCTTCGGCTTGGAGGCTGACGACGTCAAGTACGTAACCCAGCACTTCCGCTACACTTTCGTCAACGACAAGGTCAAGCGCAGCGCCCGCTACTACTCCCCCGGCTGGCGCACTTGGGCAGCCGTCGCCATCCAGCTCGCCTGGCGCCGTTATCGCCACCGTCTCACACTCACGTCTTTGTCCTTTATTCGGCCCCGCCGCCCACTCTCACGCTGCTCTTCCTTAGGGGAGGATCGCCTCCGCCTCTATACGGCATTGCTTACTTCTCCTAAGCCCAATCAGGACCATTTTGATTTTTGA 1974 50.05 MATTSDTSDHEQLEEEESEEEPSNGGFCRSLYGVGSVLDPTTKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWTCVFIDGWLAITVTVLRCMADALHLWNIWLQLKTATRSSFSGSSGGDVTAENRGLRDTTPRAVALRYFKSKKGFFFDLFVILPIPQVVLWVVIPRIMKEGRVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCGARSNSCGVRLLSCKDPIFYGANNMGIGRDRGRFDWANNRQIKLMCLDTSDNYDYGAYKWTVQLVINQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVQSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8510796 8516888 - ClG42_10g0062700.10 Clacu10g0627 259251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0627 657 SMART cnmp_10 460 589 IPR000595 -
Clacu10g0627 657 MobiDBLite consensus disorder prediction 1 26 - -
Clacu10g0627 657 Pfam Cyclic nucleotide-binding domain 481 570 IPR000595 -
Clacu10g0627 657 FunFam Cyclic nucleotide-gated ion channel 1 387 451 - -
Clacu10g0627 657 SUPERFAMILY cAMP-binding domain-like 386 574 IPR018490 -
Clacu10g0627 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 35 614 - -
Clacu10g0627 657 SUPERFAMILY Voltage-gated potassium channels 40 381 - -
Clacu10g0627 657 ProSiteProfiles cAMP/cGMP binding motif profile. 460 539 IPR000595 -
Clacu10g0627 657 FunFam cyclic nucleotide-gated ion channel 4 458 576 - -
Clacu10g0627 657 CDD CAP_ED 460 566 IPR000595 -
Clacu10g0627 657 Gene3D Helix hairpin bin 385 451 - -
Clacu10g0627 657 Gene3D Jelly Rolls 458 576 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0627 Clacu-Chr10:8510796 Clacu11g0608 Clacu-Chr11:5862014 1.40E-184 dispersed
Clacu10g0627 Clacu-Chr10:8510796 Clacu10g1427 Clacu-Chr10:27418634 1.10E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0627 K05391 - csv:101207531 1220.68