Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0660 ATGGATCGGGTGCTAAAGGCCGCAAGAGCATCCGTTCAGGCAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTTACAACAAACTTTTTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCGTTAATGAGAATACCTGAGGAAATTGGATCCGCCATTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTGAAGGCATCAAACAACTCCATTTCCAGCTTGCCCGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAATGGTGATTTCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAGAATTTGCTTAATGAATTGCCTGAGAATATTGGTAGCCTATCACGCCTCATTCGTTTAAATATATTCCAAAACAAAATTTCATCAATTCCAGCTTCAATAAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGTTGAAAGAGTATCCAGTTGAGGCATGCAGGTTGCATCTCTTGCTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATCGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAAGTTTCTCCGAAGTAGACTTCCTGAAAATGAAGAGCCTGAAGCTAGTAGCACTCAAAGAGGGGATGTAATATCTATGGCAGCTAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAGTTGAACTTTCCTCATGTACTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAAGCAGTCTCCATGCTACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCTGGCTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGTTACATGAAGTTCCATCATCTATATTGGGCTTAAGGCACCTGCGGATACTTGATTTGAGTCAAAATTCAATTCAATTAGTTCCAGAGGTAAACAGTGTAGTTGCAATCCAAGAGGCCTTAACGGCTGGAGACCCAAAAACCCTACTTAACCCCCACGACTCTTGTATGGATGGTCCGACCCTCATTCTCTCCCTTCCTTGTACTCCTGTGGATTCCCTTTCTTGCCCCTCCTCTGCGTCTGTCCCTTACTCACTCGATTGGACAACTCCCGTAAATCGCTCGACATCCTCTCAACATTTTGACAAGTCGTCACCACCAGTTCCTTCAAAACTGCTAGCTCCTTTTCTTAAGCTTCAAACCGCTCTTCATCATCTTTTGTGCCATTCTTCTTGTGATCCCCAGTGTTGA 1800 42.94 MDRVLKAARASVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLTVLNVSYNKLFELPAAIGELPALKLLDVSFNSLMRIPEEIGSAISLVKFDCSSNHLKELPGGLGRCSDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLMVISKNLIASWTMLTELNASKNLLNELPENIGSLSRLIRLNIFQNKISSIPASIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACRLHLLLLDLSNNSLSGLPSEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLKFLRSRLPENEEPEASSTQRGDVISMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSLQELPVELSSCTSLQTLILSRNKIKDWPGAILKSLPNLMCLKLDNNPLKQIPSDGFQAVSMLQVLDLSGNIASLPEHPTFSGLPLLQELYLRRMRLHEVPSSILGLRHLRILDLSQNSIQLVPEVNSVVAIQEALTAGDPKTLLNPHDSCMDGPTLILSLPCTPVDSLSCPSSASVPYSLDWTTPVNRSTSSQHFDKSSPPVPSKLLAPFLKLQTALHHLLCHSSCDPQC 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9184034 9203619 - ClG42_10g0066000.10 Clacu10g0660 259284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0660 599 SUPERFAMILY L domain-like 22 296 - -
Clacu10g0660 599 ProSiteProfiles Leucine-rich repeat profile. 382 403 IPR001611 GO:0005515(InterPro)
Clacu10g0660 599 Pfam Leucine rich repeat 382 439 IPR001611 GO:0005515(InterPro)
Clacu10g0660 599 Pfam Leucine rich repeat 23 80 IPR001611 GO:0005515(InterPro)
Clacu10g0660 599 Pfam Leucine rich repeat 231 287 IPR001611 GO:0005515(InterPro)
Clacu10g0660 599 ProSiteProfiles Leucine-rich repeat profile. 477 498 IPR001611 GO:0005515(InterPro)
Clacu10g0660 599 SMART LRR_bac_2 357 376 - -
Clacu10g0660 599 SMART LRR_bac_2 67 86 - -
Clacu10g0660 599 SMART LRR_bac_2 44 63 - -
Clacu10g0660 599 SMART LRR_bac_2 183 202 - -
Clacu10g0660 599 SMART LRR_bac_2 113 132 - -
Clacu10g0660 599 SMART LRR_bac_2 251 270 - -
Clacu10g0660 599 SMART LRR_bac_2 475 494 - -
Clacu10g0660 599 SMART LRR_bac_2 163 179 - -
Clacu10g0660 599 FunFam GH01279p 326 506 - -
Clacu10g0660 599 SMART LRR_typ_2 452 474 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 136 159 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 358 380 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 253 273 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 428 451 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 67 90 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 381 403 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 229 252 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 274 297 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 183 206 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 404 427 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 44 65 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 22 43 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 91 113 IPR003591 -
Clacu10g0660 599 SMART LRR_typ_2 475 497 IPR003591 -
Clacu10g0660 599 Gene3D Ribonuclease Inhibitor 321 517 IPR032675 -
Clacu10g0660 599 PANTHER - 20 149 IPR050216 -
Clacu10g0660 599 Gene3D Ribonuclease Inhibitor 249 309 IPR032675 -
Clacu10g0660 599 Gene3D Ribonuclease Inhibitor 154 248 IPR032675 -
Clacu10g0660 599 Gene3D Ribonuclease Inhibitor 11 153 IPR032675 -
Clacu10g0660 599 SUPERFAMILY L domain-like 338 489 - -
Clacu10g0660 599 PRINTS Leucine-rich repeat signature 475 488 - -
Clacu10g0660 599 PRINTS Leucine-rich repeat signature 254 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0660 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33