Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0663 ATGGCGGCGGCTTCAGCGATTTTCAAAATCTTCAGGAGGTCATCTTCAGGCTGCACTAGAACAGCAAGAACAGAGACAGATGCATTTTATTTTGTGGTGTTGAGATTATACAGCGCAAGACGAAGCTGCGATCGAAGAAACCTCTTTGCGAGGATTAGTCCTCTTGGTGACCCTGAGCTTAGTGTAGTGCCGGTTCTTAATCAATGGATTGAGGAAGGCAGGAAGATCAAGGATTTTGAGCTCCGGAGAATCGTTCGCGACCTTCGTACTTCCCGGCGGTATGGGCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCGTGCAGCTTGATTTGATTGGCCGAGTTCGTGGGTTGGATTCTGCAGAGAAGTATTTTGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAAAACTGGCCAGGCTGATAAGGTTCCAAATGTACTGTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAAGTCTGATGTAATCAGTATGGAAAAGGTCTTGAAAGAAATGGAGAGTCAAACTCACATATCCATGGATTGGACTACTTATTCAATGGTTGCCAGTTTTTTCATCAAAGCCAGTATGCATGAGAAAGCAATTAGTTATCTTCGGAAATGTGAGGACAAGGTCGATCAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACACCAGTTTGGGACACAAGGATGAAGTAATGAGATTGTGGGCTCTTCAGAAGAAGTGTAAGAAGCAAGTGAACAGGGATTATATAACCATGTTGAGTTCTTTTGTAAAGCTGGAGTTGCTCGAGGAAGCTGAGAATCTTCTCGTGGAATGGGAGTCATCTTGCGAATGTTATGATTTTCGAGTTCCCAACATCGTTCTTATCGGGTATTCGCAAAAGGGGTTAATTGAGAGAGCTGAAAAGATGCTTCGAAACATCATCAAAGATGGGAGGATCCCATCACCAAATAGTTGGGGCATTATTGCAGCTGGGTACTTGGAAAAGCAGAACCTGGAGAAAGCTTTTCAGAGCATGAAAGAAGCTCTTGCTGTGAAAGAGCAAAATAAAGGGTGGAGGCCCAAACCTAGCGTTTTCTCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAAGAGCTGAAAGAGTTTTTGAGCTCATTGAAGACTGTACCTTCCATGGATGGAAAACTAAATAATGCCTTGGATGAGCTTCTGAAAACCTTGAATGATGATTGA 1446 42.81 MAAASAIFKIFRRSSSGCTRTARTETDAFYFVVLRLYSARRSCDRRNLFARISPLGDPELSVVPVLNQWIEEGRKIKDFELRRIVRDLRTSRRYGQALEVSEWMCSKGLFSLTTRDFAVQLDLIGRVRGLDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKSLAHMQKMKEMGFASSPLCYNDIMCLYLKTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGAKSDVISMEKVLKEMESQTHISMDWTTYSMVASFFIKASMHEKAISYLRKCEDKVDQDALGFNHLISHYTSLGHKDEVMRLWALQKKCKKQVNRDYITMLSSFVKLELLEEAENLLVEWESSCECYDFRVPNIVLIGYSQKGLIERAEKMLRNIIKDGRIPSPNSWGIIAAGYLEKQNLEKAFQSMKEALAVKEQNKGWRPKPSVFSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLNNALDELLKTLNDD 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9280886 9282806 - ClG42_10g0066300.10 Clacu10g0663 259287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0663 481 Coils Coil 404 424 - -
Clacu10g0663 481 NCBIfam pentatricopeptide repeat 149 178 IPR002885 -
Clacu10g0663 481 NCBIfam pentatricopeptide repeat 184 216 IPR002885 -
Clacu10g0663 481 Gene3D Tetratricopeptide repeat domain 70 230 IPR011990 GO:0005515(InterPro)
Clacu10g0663 481 Gene3D Tetratricopeptide repeat domain 231 312 IPR011990 GO:0005515(InterPro)
Clacu10g0663 481 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515(InterPro)
Clacu10g0663 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Clacu10g0663 481 Pfam PPR repeat 150 178 IPR002885 -
Clacu10g0663 481 Pfam PPR repeat 324 349 IPR002885 -
Clacu10g0663 481 Pfam PPR repeat 360 386 IPR002885 -
Clacu10g0663 481 PANTHER OS12G0527900 PROTEIN 30 462 - GO:0005739(PANTHER)
Clacu10g0663 481 Gene3D Tetratricopeptide repeat domain 321 478 IPR011990 GO:0005515(InterPro)
Clacu10g0663 481 SUPERFAMILY TPR-like 158 425 IPR011990 GO:0005515(InterPro)
Clacu10g0663 481 Pfam PPR repeat family 184 227 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0284 Clacu-Chr7:3179797 Clacu10g0663 Clacu-Chr10:9280886 1.10E-72 dispersed
Clacu07g0285 Clacu-Chr7:3184211 Clacu10g0663 Clacu-Chr10:9280886 2.80E-34 dispersed
Clacu07g0286 Clacu-Chr7:3185221 Clacu10g0663 Clacu-Chr10:9280886 8.50E-14 dispersed
Clacu09g1664 Clacu-Chr9:29488662 Clacu10g0663 Clacu-Chr10:9280886 2.50E-30 dispersed
Clacu10g0663 Clacu-Chr10:9280886 Clacu10g1792 Clacu-Chr10:31520381 8.70E-06 dispersed
Clacu10g0663 Clacu-Chr10:9280886 Clacu03g0602 Clacu-Chr3:6226060 6.00E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62