Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0683 ATGTACAGAGGGCAGTACAAGCCTGAACTTCCTGGCTTCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTCAATTCTCCGACTCTGCTGCACTAAGCACTTGGACTGCCTCAAACTTCAGCTCAGTTTGTTCATGGGTTGGGATTCAGTGCTCTGACGGACGAGTTGTGTCAGTCAACTTGACAGATTTGAGTCTTGGTGGCTATGTTTCACCGTTGATTTCAAGTCTTGACCAACTTACTGAGCTGTCTGTCGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGTGAATTTGAGTTATCTTCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGACTCTGCACTGGAACTTTTCGAGCCTGCCGAACTTGGAGGTGTTGGATGCCTATAACAACAACTTCAGCGCTGTTCTCCCCACTGAGATTGTGAATTTACAGAACCTCAAATACTTGGACCTTGGAGGTAACTTTTTCCATGGAAAAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCAATATTTTTCTATTGGAGGAAATGATTTGGTTGGGAAAATCCCAGGAACGTTGGGAAATCTCACAAATTTGAGAGAAATTCACTTGGGCTATTACAATGTTTTCGAAGGGGGGATTCCACCTGAGCTAGGGAAGTTGACCAATTTGGTTATCATGGAGATTGCAGACTGCAGTTTGGATGGGGAAATTCCTCATGAACTTGGAAATTTGAAGGCCTTGAACACTCTGTATTTGCATACAAATTTACTCTCAGGTTCGATTCCGAAGCAGTTAGGCAATCTGACAAACTTGGTCAATCTGGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGAGCTCAAACAGCTCAACCTGTACAACCTCTTCATGAACAAGCTGCACGGATCTATTCCAGACTACATAGCAGATTTGCCGAACTTGGAGACCTTGGACCTGTGGATGAACAACTTCACCGGCACAATCCCGAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTTGACTTGTCGACAAACAAGCTCACGGGTACAATACCTGAGGGTTTGTGTTCATCAAACCAGCTGAAAATACTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGAAGGTCTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAAAATAGGGAGAGTTCATCAATACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTCAGCAGAAACTCACTTTCGGGTGAAATTCCACCTGAAATTGGTTATTGTATCCATCTCACTTACCTTGATTTGAGCAGGAACAACCTTTCTGGCCCAATTCCCCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGACAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCGGGGAAGCTACCGGAATCAGGACAGCTTGCCTTCTTCAATGCTTCATCCTTCGCCGGAAATCCCCAACTTTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAACAACAAAACCGGGAAAAACGCCGACGTATTTCAAGCTAATCTTCGCCCTCGGCCTATTGATTTGCTCTCTAGTGTTCGCCATAGCGGCAGTAGTCAAAGCGAAATCATTCAAAAGAAACGGATCAAGTTCATGGAAAATGACCTCATTCCAAAAGCTTGAATTCACCGTCTACGACGTCTTGGAGTGCGTGAAAGACGGCAACGTTATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGCCACGACCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAATATTCGACACCGAAACATCGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTCGTATATGAATACATGAGGAATGGAAGTTTAGGCGAAGCACTCCACGGCAAAAAAGCCTCGTTCCTCGGATGGAATTTGAGATACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCATCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTCGAAGCTCATGTCGCCGATTTCGGATTAGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAATGTATGTCGGTGATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATACACATTGAGAGTTGACGAGAAAAGTGATGTGTATAGTTTTGGAGTTGTGCTATTAGAGCTTTTAACGGGGCGACGACCCGTTGGAGATTTTGGAGACGGAGTGGTTGATATAGCACAATGGTGCAAAAAAGCTCTAAGAGATGGTGAGAATGAAAATGACATTCTTTGCATAGTTGACAAAAGAGTAGGAATGGTGCCCAAAGAGGAAGCAAAACATTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAATAGCGTGGAAAGACCAACAATGAGAGAAGTTGTTCAAATGTTGGCTGAATTTCCTCACCAGTCTCCCAACTGTTACCAATCTTCCTCTTCTTCTTCTCCCGGTCAAAAATTGAAGAATGGTGAAAAGGAAAGAAAATATCAGTCAAAGTCCAAATCAGATCTTTTAGTATAA 2997 44.28 MYRGQYKPELPGFSSSHSLVSDFHVLLALKQGFQFSDSAALSTWTASNFSSVCSWVGIQCSDGRVVSVNLTDLSLGGYVSPLISSLDQLTELSVAGNNFSGGIEVVNLSYLRFLNISNNQFTGTLHWNFSSLPNLEVLDAYNNNFSAVLPTEIVNLQNLKYLDLGGNFFHGKIPESYGSLEGLQYFSIGGNDLVGKIPGTLGNLTNLREIHLGYYNVFEGGIPPELGKLTNLVIMEIADCSLDGEIPHELGNLKALNTLYLHTNLLSGSIPKQLGNLTNLVNLDLSNNALTGEIPSEFVELKQLNLYNLFMNKLHGSIPDYIADLPNLETLDLWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLKILILMNNFLFGPIPEGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENRESSSIPIKLGQLNLSNNLLSGTLPSSLSNLSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNSLSGEIPPEIGYCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGTMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTTTKPGKTPTYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLEFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKKALRDGENENDILCIVDKRVGMVPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFPHQSPNCYQSSSSSSPGQKLKNGEKERKYQSKSKSDLLV 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9572979 9577964 - ClG42_10g0068300.10 Clacu10g0683 259307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0683 998 SUPERFAMILY Protein kinase-like (PK-like) 667 956 IPR011009 -
Clacu10g0683 998 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Clacu10g0683 998 MobiDBLite consensus disorder prediction 963 978 - -
Clacu10g0683 998 Gene3D Ribonuclease Inhibitor 328 617 IPR032675 -
Clacu10g0683 998 Gene3D Ribonuclease Inhibitor 21 127 IPR032675 -
Clacu10g0683 998 MobiDBLite consensus disorder prediction 963 998 - -
Clacu10g0683 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
Clacu10g0683 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0683 998 PRINTS Leucine-rich repeat signature 496 509 - -
Clacu10g0683 998 PRINTS Leucine-rich repeat signature 352 365 - -
Clacu10g0683 998 Pfam Leucine Rich Repeat 522 543 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 351 372 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 327 348 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 499 520 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 279 299 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 Pfam Leucine rich repeat 111 167 IPR001611 GO:0005515(InterPro)
Clacu10g0683 998 SUPERFAMILY L domain-like 351 607 - -
Clacu10g0683 998 SMART serkin_6 683 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0683 998 Gene3D Ribonuclease Inhibitor 128 215 IPR032675 -
Clacu10g0683 998 Gene3D Ribonuclease Inhibitor 216 321 IPR032675 -
Clacu10g0683 998 Gene3D Transferase(Phosphotransferase) domain 1 760 977 - -
Clacu10g0683 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 618 - -
Clacu10g0683 998 Gene3D Phosphorylase Kinase; domain 1 647 759 - -
Clacu10g0683 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 129 216 - -
Clacu10g0683 998 SMART LRR_typ_2 472 494 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 325 349 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 521 544 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 132 156 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 277 301 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 496 520 IPR003591 -
Clacu10g0683 998 SMART LRR_typ_2 350 373 IPR003591 -
Clacu10g0683 998 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 171 272 - -
Clacu10g0683 998 MobiDBLite consensus disorder prediction 979 998 - -
Clacu10g0683 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 652 759 - -
Clacu10g0683 998 SUPERFAMILY RNI-like 68 416 - -
Clacu10g0683 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 760 973 - -
Clacu10g0683 998 ProSiteProfiles Protein kinase domain profile. 683 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0683 998 Pfam Protein tyrosine and serine/threonine kinase 686 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1065 Clacu-Chr3:19179979 Clacu10g0683 Clacu-Chr10:9572979 3.80E-08 dispersed
Clacu10g0683 Clacu-Chr10:9572979 Clacu10g0808 Clacu-Chr10:13816678 1.60E-139 dispersed
Clacu10g0683 Clacu-Chr10:9572979 Clacu01g1868 Clacu-Chr1:30804642 1.70E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73871 PF07714 PK_Tyr_Ser-Thr 1.60E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0683 - - - 0.0