Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0717 ATGTCCACAACAAAGCTTCTTGCCCATACCTTTGACCCAATCGATGAGAATCACGACAACGACCGCGAAATTGAAGCCTCTGAGAGGCTCGTCGGATCGCCATTTACTGAGGATAGAGATTCTGTTTCCCTCACCCTAGGCGAGCCCCTCTTGCGTACCAGTGTCGCCAGGGTCAGTACCACCTCCCAGCTCGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATCGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAGCTCGAGATATTTCAGTATATCATCCTCAAATGGACATTGTGCCTTTTCATCGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCCGGTCACAAACTTCTCCTGACAAATAATCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTGCAGTATACGTTGCTTCCAATAGTGCTTTAGCTGCTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCGAGTACCTTATTTGTGAAGATTTTTGGTTCAATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCGTTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATAACTTGTGGTGCAGCTGCTGGTGTTGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGCGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCCGTTGTCTTAAGGAGTTTCATTGAATTTTGCCGAGGGGGAGAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGGACCCCAGATCTTATTGCAATTGTTTTACTAGGAGTTTTTGGCGGTGTACTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGTTCTCGCAATGTTTACCGTGCCCAACTGACTTGGAGGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCACTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTACTGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCAGGGGCCTCTTACGGTCGCATTGTAGGAAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGAACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAACTTACTAATAACCTTTTGATGCTCCCATTACTGATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTGCCTTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACCTTTTCTGGGATCGAAAAGGTTGATAACATTGTCCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACTAAGCAAAAGGTGTCACTTAGATCAGAAATCTGGAGGGGATTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGTAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACGAACACGTCGCCCTACACAGTGGTAGAATCAATGTCTCTAGCTAAAGCGGCAATTCTCTTTCATGCACTTGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCTGGGAGGCCTCCTATTGCTGGAATTCTTACCCGGCACGACTTCATGCCGGAGCATGTTCTGGGACTTTACCCGCATCTCAACCCCCACAAATAG 2370 44.98 MSTTKLLAHTFDPIDENHDNDREIEASERLVGSPFTEDRDSVSLTLGEPLLRTSVARVSTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKLEIFQYIILKWTLCLFIGLITGLVGFFNNIAVENIAGHKLLLTNNLMLKEKYFQAFAVYVASNSALAAAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFIEFCRGGECGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVFGGVLGSLYNYLVDKVLRTYSIINERGPGTKLILVVGVSILTTCVSFGLPWFSQCLPCPTDLEDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKQKVSLRSEIWRGFKAHDFAKAGSGKGVKLEDLDFNEEEMEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHVLGLYPHLNPHK 789
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 10129677 10136801 + ClG42_10g0071700.10 Clacu10g0717 259341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0717 789 CDD ClC_6_like 75 596 - -
Clacu10g0717 789 Gene3D Clc chloride channel 98 597 - -
Clacu10g0717 789 Pfam CBS domain 724 774 IPR000644 -
Clacu10g0717 789 Pfam Voltage gated chloride channel 163 576 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 SUPERFAMILY Clc chloride channel 84 598 IPR014743 -
Clacu10g0717 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 776 - -
Clacu10g0717 789 FunFam Chloride channel ClC3 98 414 - -
Clacu10g0717 789 PRINTS Plant CLC chloride channel signature 291 299 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Clacu10g0717 789 PRINTS Plant CLC chloride channel signature 323 330 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Clacu10g0717 789 PRINTS Plant CLC chloride channel signature 305 315 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Clacu10g0717 789 PRINTS Plant CLC chloride channel signature 80 88 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Clacu10g0717 789 PRINTS Plant CLC chloride channel signature 447 463 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Clacu10g0717 789 Gene3D - 622 760 IPR046342 -
Clacu10g0717 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 59 777 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Clacu10g0717 789 PRINTS Chloride channel signature 545 564 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 175 192 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 495 515 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 270 289 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 583 597 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 PRINTS Chloride channel signature 527 543 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0717 789 ProSiteProfiles CBS domain profile. 723 786 IPR000644 -
Clacu10g0717 789 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0593 Clacu-Chr6:6778890 Clacu10g0717 Clacu-Chr10:10129677 1.70E-184 dispersed
Clacu10g0717 Clacu-Chr10:10129677 Clacu11g0466 Clacu-Chr11:4456807 1.70E-261 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0717 K05016 - csv:101209987 1388.24