Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0742 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGTCTGTTTGAATGATTTAACGTTATCTAACAAACAGGAGAAGACAATGAGCAATGTCAAGCCTTGCTTGTTTGAATGCTTGTCTGTGGTGAAGCTTTTCCACATTTATTTCTGTATATAA 960 47.4 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEVCLNDLTLSNKQEKTMSNVKPCLFECLSVVKLFHIYFCI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10688840 10695895 - ClG42_10g0074200.10 Clacu10g0742 259366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0742 319 MobiDBLite consensus disorder prediction 141 200 - -
Clacu10g0742 319 Pfam PHD-finger 202 248 IPR019787 -
Clacu10g0742 319 CDD PHD_AL_plant 202 251 IPR044104 -
Clacu10g0742 319 MobiDBLite consensus disorder prediction 141 162 - -
Clacu10g0742 319 MobiDBLite consensus disorder prediction 183 200 - -
Clacu10g0742 319 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Clacu10g0742 319 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Clacu10g0742 319 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g0742 319 SUPERFAMILY FYVE/PHD zinc finger 190 254 IPR011011 -
Clacu10g0742 319 MobiDBLite consensus disorder prediction 163 182 - -
Clacu10g0742 319 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g0742 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Clacu10g0742 319 FunFam PHD finger alfin-like protein 194 250 - -
Clacu10g0742 319 SMART PHD_3 201 249 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0089 Clacu-Chr9:848848 Clacu10g0742 Clacu-Chr10:10688840 8.90E-95 dispersed
Clacu10g0742 Clacu-Chr10:10688840 Clacu10g2174 Clacu-Chr10:34875109 1.90E-73 dispersed
Clacu10g0742 Clacu-Chr10:10688840 Clacu11g0303 Clacu-Chr11:2748373 4.40E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48466 PF12165 Alfin 4.20E-68 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0742 K26274 - csv:101212601 486.878