Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0760 | ATGGAACTACCTTCACCATTTGTTTTCTTACTCCACCACCTTCCTCATCGTCAATCATCGATTACCCAATTTCAGATCAATAGCAGTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTAGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGAAAAGATATCCATCCATCATCATCATCCTTCCTATGAAGAATACCTACAGTATCTCCAGAAAACCATTTTTCCTTCAGGCTTCAAATGACTGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCGGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTGCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGGTAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG | 2358 | 42.83 | MELPSPFVFLLHHLPHRQSSITQFQINSSFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLVPVVIDDKPTAGSPWDEGCYSGIDKKRYPSIIIILPMKNTYSISRKPFFLQASNDWFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDCSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSVTKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE | 785 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11110174 | 11118312 | - | ClG42_10g0076000.10 | Clacu10g0760 | 259384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 746 | 785 | - | - | |
Clacu10g0760 | 785 | SUPERFAMILY | Sm-like ribonucleoproteins | 338 | 408 | IPR010920 | - | |
Clacu10g0760 | 785 | Gene3D | - | 354 | 409 | IPR023408 | - | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 693 | 718 | - | - | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 758 | 785 | - | - | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 627 | 644 | - | - | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 586 | 605 | - | - | |
Clacu10g0760 | 785 | Pfam | Mechanosensitive ion channel, beta-domain | 338 | 408 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 658 | 677 | - | - | |
Clacu10g0760 | 785 | Gene3D | - | 249 | 352 | - | - | |
Clacu10g0760 | 785 | MobiDBLite | consensus disorder prediction | 550 | 718 | - | - | |
Clacu10g0760 | 785 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 55 | 762 | IPR045042 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g1323 | Clacu-Chr8:23221789 | Clacu10g0760 | Clacu-Chr10:11110174 | 7.10E-184 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0760 | K22047 | - | csv:101217250 | 1150.58 |