Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0760 ATGGAACTACCTTCACCATTTGTTTTCTTACTCCACCACCTTCCTCATCGTCAATCATCGATTACCCAATTTCAGATCAATAGCAGTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTAGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGAAAAGATATCCATCCATCATCATCATCCTTCCTATGAAGAATACCTACAGTATCTCCAGAAAACCATTTTTCCTTCAGGCTTCAAATGACTGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCGGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTGCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGGTAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2358 42.83 MELPSPFVFLLHHLPHRQSSITQFQINSSFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLVPVVIDDKPTAGSPWDEGCYSGIDKKRYPSIIIILPMKNTYSISRKPFFLQASNDWFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDCSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSVTKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11110174 11118312 - ClG42_10g0076000.10 Clacu10g0760 259384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0760 785 MobiDBLite consensus disorder prediction 746 785 - -
Clacu10g0760 785 SUPERFAMILY Sm-like ribonucleoproteins 338 408 IPR010920 -
Clacu10g0760 785 Gene3D - 354 409 IPR023408 -
Clacu10g0760 785 MobiDBLite consensus disorder prediction 693 718 - -
Clacu10g0760 785 MobiDBLite consensus disorder prediction 758 785 - -
Clacu10g0760 785 MobiDBLite consensus disorder prediction 627 644 - -
Clacu10g0760 785 MobiDBLite consensus disorder prediction 586 605 - -
Clacu10g0760 785 Pfam Mechanosensitive ion channel, beta-domain 338 408 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0760 785 MobiDBLite consensus disorder prediction 658 677 - -
Clacu10g0760 785 Gene3D - 249 352 - -
Clacu10g0760 785 MobiDBLite consensus disorder prediction 550 718 - -
Clacu10g0760 785 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 55 762 IPR045042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0760 K22047 - - csv:101217250 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1323 Clacu-Chr8:23221789 Clacu10g0760 Clacu-Chr10:11110174 7.10E-184 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0164 . 208 601 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Clacu08g1323 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Clacu10g0760 . 166 784 Mechanosensitive Ion Channel Family AT5G10490 58.0 4.1e-187 651.7
Clacu08g1323 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.8e-199 692.2
Clacu10g0760 . 166 561 Mechanosensitive Ion Channel Family AT1G58200 71.2 1.1e-163 573.9
Clacu02g1153 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Clacu02g0409 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Clacu02g1153 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Clacu02g1153 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Clacu02g0409 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 4.9e-270 927.5
Clacu02g1153 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.1e-237 818.1
Clacu02g0409 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Clacu02g1153 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Clacu05g1722 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Clacu03g1565 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71