Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g0803 | ATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCGGCATTTTCGACTTCATCATCCGTTCAGAGGAAATTTCGTGCGCATAAATCACTATGCACTGCCCCATGTTCCTCTTTTTATCCACAATGTCAAGGAGGAGCTTATGGTTTATGTGCCGTTAAATGTGCTTCTTCAAATGGGAAGGGGCCTGATTCCCTGGATAATGGAGTTAAAAAAGTGGAGAGGTTACTTGAAGAGAAACGGCGGGCTGAATTGTCTGCTCGGATCGCTTCTGGCGAATTTACAGTCGAAAAAACTGGTTTTCCATCTATATTGAGGAGTGGGTTGTCAAAGTTGGGTGTTCCCAGTGAGATTCTGGATTTACTATTTGGTTTCGTCAATGCTCAAGAAGAATATCCCAAGATCCCAGAAGCTAAAGGATCAATAAGTGCAATTCGTAGTGAGGCTTTCTTCATACCTCTGTATGAGCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCGTTCTTGATAGTGTCTGATCCTTCCATTGCTAAACATATACTGAAGGATAATCCAAAGAACTATTCTAAGGGTATCTTAGCTGAAATTCTTGACTTCGTCATGGGGAAGGGGCTTATACCAGCTGATGGGGAGATATGGCGTGTACGAAGAAGGGCTATAGTCCCTTCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGATAGGCTTTGCAAGAAGCTAGATGCTGCAGCATCTGATGGAGTAGATGTGGAAATGGAGTCCCTATTCTCCCGTTTGACTTTAGATATCATTGGCAAGGCAGTTTTTAACTATGACTTTGATTCACTTACAAATGATGCTGGCATAGTTGAGGCTGTTTATACTGTGCTAAGAGAAGCAGAAGATCGCAGTGTTGCGCCAATTCCGGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAAAAAAAGGTCTCCAAAGCCCTCAAATTGATCAATGGCACTCTTGATCAACTAATTGCTATATGCAAGAGGATGGTTGATGAGGAGGAACTGCAGTTTCATGAGGAATACATGAATGAGCAAGATCCTAGCATCCTTCATTTCCTTTTGGCATCAGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACCATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTCTTAACATGGACCTTTTATCTTCTTTCGAAGGAGCCTAGGGTCATGGCCAAGCTCCAAAAGGAGGTTGACTCAGTCCTTGGGGATCGTTTTCCAACCATTGAAGATATGAAGAACCTCAAATATGCCACACGAATAATTAATGAATCCTTGAGGCTTTACCCACAGCCCCCAGTTTTAATACGTCGATCCCTTGATAACGATATGCTCGGGAAGTACCCCATAAAGAAGGGTGAGGACATATTCATATCTGTTTGGAACTTGCATCGCAGTCCAGAACTTTGGGATGATGCAGATAAGTTTAATCCTGAAAGGTGGCCCTTGGATGGACCCAATCCTAATGAGACAAATCAAAATTTCAGATATTTGCCTTTTGGTGGTGGACCACGGAAATGTGTGGGAGACATATTTGCTTCATATGAGACTGTTGTAGCACTTGCCATGCTTGTACGGCGATTTGACTTCCAAATAGCACTTGGAGCACCTCCAGTAAAAATGACAACAGGAGCTACAATTCACACAACAGATGGATTGCAAATGACAGTTACACGAAGAATGAAACCTCCAATCATACCCACTTTAGAGGTGCCTGAAATGGTCGTTGATTCATCTGTCAGTTTCTTGAAAGATGAAACACAAATTGTTCAAGAAGGAGAAGTTTCTTCTGCACATTCCTAA | 1893 | 42.37 | MAANFAMLKPCSAFSTSSSVQRKFRAHKSLCTAPCSSFYPQCQGGAYGLCAVKCASSNGKGPDSLDNGVKKVERLLEEKRRAELSARIASGEFTVEKTGFPSILRSGLSKLGVPSEILDLLFGFVNAQEEYPKIPEAKGSISAIRSEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDAAASDGVDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDAGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQKKVSKALKLINGTLDQLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRVMAKLQKEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLDNDMLGKYPIKKGEDIFISVWNLHRSPELWDDADKFNPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDIFASYETVVALAMLVRRFDFQIALGAPPVKMTTGATIHTTDGLQMTVTRRMKPPIIPTLEVPEMVVDSSVSFLKDETQIVQEGEVSSAHS | 630 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 13432172 | 13439708 | + | ClG42_10g0080300.10 | Clacu10g0803 | 259427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g0803 | 630 | CDD | CYP97 | 151 | 583 | - | - | |
| Clacu10g0803 | 630 | Pfam | Cytochrome P450 | 154 | 574 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 530 | 539 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu10g0803 | 630 | FunFam | Carotene epsilon-monooxygenase, chloroplastic | 135 | 592 | - | - | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 537 | 560 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 407 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 449 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 489 | 513 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 387 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 527 | 537 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | E-class P450 group I signature | 157 | 176 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | Gene3D | Cytochrome P450 | 132 | 596 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | P450 superfamily signature | 537 | 548 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | P450 superfamily signature | 528 | 537 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | P450 superfamily signature | 398 | 415 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PRINTS | P450 superfamily signature | 450 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g0803 | 630 | PANTHER | CYTOCHROME P450 FAMILY 4 | 145 | 570 | IPR050196 | GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER) | |
| Clacu10g0803 | 630 | SUPERFAMILY | Cytochrome P450 | 145 | 590 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g1957 | Clacu-Chr5:28718315 | Clacu10g0803 | Clacu-Chr10:13432172 | 6.70E-28 | dispersed | |
| Clacu07g1099 | Clacu-Chr7:25527443 | Clacu10g0803 | Clacu-Chr10:13432172 | 7.70E-120 | dispersed | |
| Clacu10g0803 | Clacu-Chr10:13432172 | Clacu11g1892 | Clacu-Chr11:29977647 | 8.60E-30 | dispersed | |
| Clacu10g0803 | Clacu-Chr10:13432172 | Clacu04g1007 | Clacu-Chr4:24295185 | 7.30E-130 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g0803 | K15747 | - | csv:101215492 | 1161.75 |