Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0804 ATGCCATTTCTGAACCTTCCTCCATCTTCTCCCCACCTTCTTTTCTTCATCATTTACTTCTTCTTCTTCTTTCAGTTCTCTGTTTTCGCTCTCTTCTCCAACCACGATTACGATATTCTGATACGAATTAAAAACACCCATTTCGATGATCCCAAAGGCTGTTTGAACAATTGGGTTCCCAACCAAGCTCACAACCCCTGTAATTGGACTGGAATCACCTGCGATTCCACTAATTCCTCTGTTCTTTCCATCGATCTCAGTGATTCCGGCGTCTCCGGCGGATTTCCCTTCGAGTTTTGCCGGATTTCGTCTCTGAAATCCCTTTCTATCTCCAACTGCAGCGTCAATGGAACTTTACTCTCTCCTTCCTTCTCTCTCTGTTCTCACTTGCAACTCCTTAATCTTTCCTCTAACTTACTCGTCGGGAACTTGCCGGAGTTTTCCGCTGGTTTCACACAACTGAAAATTCTCGATCTCTCCGCCAACAATTTCACCGGTGATATTCCTCAAAGCTTCGGACAGTTACCGGCGCTGAGAGTGCTCCGTTTGTCGCAGAATCTGCTCAACGGCTCATTACCTTCTTTTCTGGGAAAACTCAGTGAGCTAACTGAAATGGCCATCGCTTATAATAATTTCAAACCCAATCGGTTACCACCTGAAATCGGAAACCTGAAGAAACTTGTAAACCTGTTTTTACCGTTTTCGAATTTCGTTGGACCCATTCCTGATTCCATCGGCAACCTTACTTTGCTTACTAATCTCGATTTGTCTAGCAATTCCATTTCGGGTCCGATCCCGGATTCAATCGGCGGACTAAGGAGCATAAAGAAGATTCAACTCTATAACAATCGAATCTCCGGTGAGTTGCCGGAGATCATCGGAAATTTGACTACTCTGTTTTCGCTGGACATCTCGCAGAATAGTCTCACCGGGAAACTGCCGGAGAAAATTGCTGCTCTCCCTCTTCAATATCTGCATCTCAGTGACAATTTCCTCGACGGCGAGGTCCCGGAGAGCTTAGCTTCTAACCCAAATCTTCTCAATTTGAAATTGTTTAACAATAGCTTTTACGGCGAACTTCCCCGGAATTTGGGTCTGAATACTTATTTGAATGAGATTGATGTCTCTACCAACAATTTTGTGGGTGAAATTCCGAAATTTCTCTGCCATGGAAACCAACTTCAGAAAATCGTTTTATTCAACAACCGTCTCTCTGGAAATTTCCCAGAATCGTACGGTAGTTGCGATTCTCTGTATTATGTCAGAATTGAGAACAATCAACTTTCCGGGAAGGTACCGGACTCGTTCTGGAATCTCTCTAAGCTTACTAATATTCTGCTGGCGGAAAATCGATTTCAGGGCTCCATTCCTCCGGCGATAAGTGGCGTTCGTTTTCTCGAAGATTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTACCGAAGGAGATTTGCAAATTGCAAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTTTCCGGCGGAGTTCCTTCCTGTATAACAGAGTTGCAGCATCTTCAGAAGCTCGACATGGAAGAAAACATGTTCACCGGGGAAATACCCAATTCGGTTTACACATGGAAAGAACTAACCGAGTTGAATCTGTCGCACAATCAATTCATCGGTGAGATTCCGCCTCAACTCGGCGATTTACCAGTTCTAAAGTACTTGGATCTCTCTGCAAATTCACTCTCCGGCAAAATCCCCGAGGAATTGACGAAGCTTAAACTGGGTCAGTTCAATTTCTCCAACAACAAATTAACCGGAAAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAGTAGCTTAATGGGTAATCCGGGTCTGTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCCAAACCCAAATCCATAAGTTTTTATGTTGTCATTGTTTTGTCGCTTATCGCTTTCGTTCTCGTCGGCTCTCTCATCTGGGTAATCAAATTCAAGATGAATCTTTTCAAGAAATCGAAATCCCCATGGACGGTGACCAAGTTTCAACGTGTCGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATGTTATAGGGTCAGGCGGGTCAGGTACTGTCTTCAAGGTTGATCTAAAAATGGGTCAGACCATCGCAGTGAAGAACCTATGGGGTGGCCACAATAAATTGGATACAGAATTGGTTTTCCAGTCTGAAGTTGAGACATTGGGTCGGATCCGGCATGCCAATATTGTGAAGTTGCTCTTAAGTTGTAGCAATGGCGAAGGAAGTAGGATTCTTGTGTACGAGTACATGGAAAATGGTAGTTTGGGAGATGTCCTACACGAACACAAATCCGAAGCTTTGTCTGATTGGTCAAAACGATACAACATCGCCCTCGGAGCAGCCCAAGGATTAGCTTACTTGCACCATGACTGCGTCCCTCCGATAATCCATCGCGATGTGAAGAGTAACAACATTCTCTTGGATGGAGAATTTCAACCTCGGGTGGCTGACTTCGGTTTGGCAAAGTCAATGCAACGACAGGCAGAAGCAAATGATGGCAATGTCATGTCTCGCATTGCTGGCTCCTACGGTTACATTGCCCCTGAGTATGGATATACAATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTGGTGTTGATGGAGCTAGTGACAGGGAAGCGACCGAACGATGCGTGTTTTAGGGAGAATGAAGATATTGTGAAATGGGTGACAAAGGCTGCTTTGTCCGAGGGAAAAGAAGAGAAAGGGTTGAGTTTGGATGAGATTATTGATGAAAAGTTGGATCCAAGGACATGTGAAGTAGAAGAGATTGTCAAGATTTTGGATGTGGCAGTGCTTTGTACTTCTGCTTTGCCTCTCAACAGACCATCCATGAGGAGAGTGGTTGAGCTCATAAGGGACACCAAATTGCCTCATTCCAAGTCATGA 2958 44.73 MPFLNLPPSSPHLLFFIIYFFFFFQFSVFALFSNHDYDILIRIKNTHFDDPKGCLNNWVPNQAHNPCNWTGITCDSTNSSVLSIDLSDSGVSGGFPFEFCRISSLKSLSISNCSVNGTLLSPSFSLCSHLQLLNLSSNLLVGNLPEFSAGFTQLKILDLSANNFTGDIPQSFGQLPALRVLRLSQNLLNGSLPSFLGKLSELTEMAIAYNNFKPNRLPPEIGNLKKLVNLFLPFSNFVGPIPDSIGNLTLLTNLDLSSNSISGPIPDSIGGLRSIKKIQLYNNRISGELPEIIGNLTTLFSLDISQNSLTGKLPEKIAALPLQYLHLSDNFLDGEVPESLASNPNLLNLKLFNNSFYGELPRNLGLNTYLNEIDVSTNNFVGEIPKFLCHGNQLQKIVLFNNRLSGNFPESYGSCDSLYYVRIENNQLSGKVPDSFWNLSKLTNILLAENRFQGSIPPAISGVRFLEDLLISGNNFSGQLPKEICKLQELVRLDVSRNKFSGGVPSCITELQHLQKLDMEENMFTGEIPNSVYTWKELTELNLSHNQFIGEIPPQLGDLPVLKYLDLSANSLSGKIPEELTKLKLGQFNFSNNKLTGKVPSGFDNELFVSSLMGNPGLCSPDLKPLNRCPKPKSISFYVVIVLSLIAFVLVGSLIWVIKFKMNLFKKSKSPWTVTKFQRVGFDEEDVIPHLTKANVIGSGGSGTVFKVDLKMGQTIAVKNLWGGHNKLDTELVFQSEVETLGRIRHANIVKLLLSCSNGEGSRILVYEYMENGSLGDVLHEHKSEALSDWSKRYNIALGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFQPRVADFGLAKSMQRQAEANDGNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFRENEDIVKWVTKAALSEGKEEKGLSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSALPLNRPSMRRVVELIRDTKLPHSKS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13660984 13664024 - ClG42_10g0080400.10 Clacu10g0804 259428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0804 985 SUPERFAMILY Protein kinase-like (PK-like) 684 974 IPR011009 -
Clacu10g0804 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0804 985 FunFam Leucine-rich repeat receptor-like protein kinase 33 194 - -
Clacu10g0804 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 770 985 - -
Clacu10g0804 985 ProSiteProfiles Protein kinase domain profile. 691 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0804 985 Gene3D Ribonuclease Inhibitor 215 319 IPR032675 -
Clacu10g0804 985 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Clacu10g0804 985 Pfam Leucine Rich Repeat 466 487 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 513 532 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 562 583 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 322 342 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 275 296 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 251 272 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 Pfam Leucine Rich Repeat 538 559 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 SMART serkin_6 691 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0804 985 Pfam Protein kinase domain 693 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0804 985 SUPERFAMILY RNI-like 79 389 - -
Clacu10g0804 985 Gene3D Ribonuclease Inhibitor 33 214 IPR032675 -
Clacu10g0804 985 Gene3D Phosphorylase Kinase; domain 1 666 769 - -
Clacu10g0804 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 22 975 IPR050647 -
Clacu10g0804 985 SUPERFAMILY L domain-like 370 625 - -
Clacu10g0804 985 Gene3D Ribonuclease Inhibitor 321 636 IPR032675 -
Clacu10g0804 985 FunFam Receptor-like protein kinase HSL1 321 626 - -
Clacu10g0804 985 Gene3D Transferase(Phosphotransferase) domain 1 770 984 - -
Clacu10g0804 985 FunFam Leucine-rich receptor-like protein kinase family protein 217 315 - -
Clacu10g0804 985 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515(InterPro)
Clacu10g0804 985 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524(InterPro)
Clacu10g0804 985 ProSiteProfiles Leucine-rich repeat profile. 537 560 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1376 Clacu-Chr1:25090533 Clacu10g0804 Clacu-Chr10:13660984 8.00E-06 dispersed
Clacu03g0792 Clacu-Chr3:8907345 Clacu10g0804 Clacu-Chr10:13660984 6.00E-94 dispersed
Clacu03g1651 Clacu-Chr3:30157471 Clacu10g0804 Clacu-Chr10:13660984 6.50E-72 dispersed
Clacu08g1364 Clacu-Chr8:23677733 Clacu10g0804 Clacu-Chr10:13660984 4.30E-84 dispersed
Clacu09g1613 Clacu-Chr9:28212378 Clacu10g0804 Clacu-Chr10:13660984 2.60E-54 dispersed
Clacu10g0804 Clacu-Chr10:13660984 Clacu11g1674 Clacu-Chr11:27981494 1.20E-73 dispersed
Clacu10g0804 Clacu-Chr10:13660984 Clacu10g0808 Clacu-Chr10:13816678 1.10E-74 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73873 PF00069 Pkinase 1.30E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0804 - - - 0.0