Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0808 ATGCAGCTTCTTCTCCTTCTCTTTCTCCTTCTTCACCTCCATCTTCATCTCTCCCTTTCTTCTCACTTGCCTGAATATCGCGCTCTTCTCTCTCTCAAGAGCTCGTTTTCCGATGACTCCCAATCGCCGCTCTCCACTTGGGACGCCGCCACTGCCCACTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTCGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGGTTCTCTCCGGTTTCTCTCTAATCTCTCCCTCCCGTCCAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCCATCTCTACACTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGTACATTGCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATACAGTTGCCAAATCTCCGCCATTTGCATCTCGGGGGGAACTTCTTCTCCGGTGTGATTCCGCCGGGGTATGGAATGTGGCAGTTCATGGAGTATTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGATCCCGCCGGAGATTGGTAATCTGACGAAGCTTCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGGTTTGCCGCCGGAAATTGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTGACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTATCTAACAACATTCTTGTTGGTGAGATTCCGGAGTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGTTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCAAACAAGTTGACTGGAACTTTGCCTCCCGATATGTGCAATGGAAATAAACTTCAAACTCTGATAACCCTCGGTAATTTCTTGTTTGGTCCAATCCCTGAATCTCTTGGTAGATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTTCCATCCCGAACGGTCTTTTCGGTTTGCCTAATCTTTCTCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCGGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGGCTCTCGGGATCCCTTCCATCGATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGACGGTTACAGCAGCTGTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCGGAGATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCGGGTGAGATTCCGAATGAAATCACCGCAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACGGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCGTACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACACAGCAGCCTCATTTAAAAGCCTCACTCTCTTCTTCTGTGAAACTTCTGCTTGTCATTGTTTTGCTCGTCTGCTCGATCGCATTTGCCATTGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCAAGCGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGACTAGATTTCACAGCAGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGTGCTGGGATAGTTTACAAAGGTTTTATGCCGAGTGGCGATCACATCGCTGTGAAAAGACTGCCGGCGATGGGGCGAGGATCATCCCATGACCATGGATTCAATGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGTTTCTGCTCAAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCGCCATTGATTGTCCATCGAGATGTAAAATCAAACAACATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTAGACGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTACTCTTAGAATTGGTGAGTGGGCGGAAGCCCGTCGGAGAATTTGGCGATGGGGTCGACATAGTTCAGTGGGTCAGGAAAATGACTAGTCCCAACAATGAAGGGGTAGCGAAAATCATAGATCCACGGCTCTCCTCAGTCCCGCTGAATGAAGTAACTCATGTATTCTATGTAGCAATGCTATGTGTGGAAGACCAAGCCGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTCACAGAACTCCCAAGGCCACCAACTTCAAAACAAATAAACTCAAAAGAAGCCGAAGTAACAACCCCGACGCTGCTGCCATCGTCCCCAGTGGTGGCATTAGATTCACCGAACAAAGCACAGCCACCACCTGATCTTCTGAGCATTTGA 3027 46.35 MQLLLLLFLLLHLHLHLSLSSHLPEYRALLSLKSSFSDDSQSPLSTWDAATAHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLSNLSLPSNQISGPIPPEISAISTLKYLNLSNNLINGTLPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGMWQFMEYLAVSGNELQGPIPPEIGNLTKLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPESFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNKLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPNGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPSMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITAMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKASLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDHIAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVAKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRPPTSKQINSKEAEVTTPTLLPSSPVVALDSPNKAQPPPDLLSI 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13816678 13819877 + ClG42_10g0080800.10 Clacu10g0808 259432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0808 1008 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Clacu10g0808 1008 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0808 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Clacu10g0808 1008 MobiDBLite consensus disorder prediction 967 994 - -
Clacu10g0808 1008 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 355 376 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 524 543 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Clacu10g0808 1008 SUPERFAMILY L domain-like 23 220 - -
Clacu10g0808 1008 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Clacu10g0808 1008 SMART LRR_typ_2 160 183 IPR003591 -
Clacu10g0808 1008 SMART LRR_typ_2 281 305 IPR003591 -
Clacu10g0808 1008 SMART LRR_typ_2 497 521 IPR003591 -
Clacu10g0808 1008 SMART LRR_typ_2 354 377 IPR003591 -
Clacu10g0808 1008 SMART LRR_typ_2 569 592 IPR003591 -
Clacu10g0808 1008 SMART LRR_typ_2 329 353 IPR003591 -
Clacu10g0808 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Clacu10g0808 1008 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Clacu10g0808 1008 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0808 1008 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Clacu10g0808 1008 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Clacu10g0808 1008 Gene3D Ribonuclease Inhibitor 221 378 IPR032675 -
Clacu10g0808 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0808 1008 MobiDBLite consensus disorder prediction 967 1008 - -
Clacu10g0808 1008 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0808 1008 SUPERFAMILY Protein kinase-like (PK-like) 685 960 IPR011009 -
Clacu10g0808 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Clacu10g0808 1008 Gene3D Ribonuclease Inhibitor 379 615 IPR032675 -
Clacu10g0808 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 962 IPR050647 -
Clacu10g0808 1008 SUPERFAMILY RNI-like 225 587 - -
Clacu10g0808 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1868 Clacu-Chr1:30804642 Clacu10g0808 Clacu-Chr10:13816678 9.20E-23 dispersed
Clacu01g1869 Clacu-Chr1:30820162 Clacu10g0808 Clacu-Chr10:13816678 3.10E-21 dispersed
Clacu01g2679 Clacu-Chr1:36892367 Clacu10g0808 Clacu-Chr10:13816678 4.00E-132 dispersed
Clacu05g0407 Clacu-Chr5:3500278 Clacu10g0808 Clacu-Chr10:13816678 5.00E-76 dispersed
Clacu05g1979 Clacu-Chr5:28898855 Clacu10g0808 Clacu-Chr10:13816678 1.70E-08 dispersed
Clacu06g0774 Clacu-Chr6:9033389 Clacu10g0808 Clacu-Chr10:13816678 3.50E-79 dispersed
Clacu07g0131 Clacu-Chr7:1718152 Clacu10g0808 Clacu-Chr10:13816678 5.20E-85 dispersed
Clacu09g2177 Clacu-Chr9:36499694 Clacu10g0808 Clacu-Chr10:13816678 7.50E-66 dispersed
Clacu10g0683 Clacu-Chr10:9572979 Clacu10g0808 Clacu-Chr10:13816678 1.60E-139 dispersed
Clacu10g0808 Clacu-Chr10:13816678 Clacu11g1674 Clacu-Chr11:27981494 1.80E-74 dispersed
Clacu10g0804 Clacu-Chr10:13660984 Clacu10g0808 Clacu-Chr10:13816678 1.10E-74 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73874 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0808 - - - 0.0