Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0833 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCTCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTGTTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTTATTGGATTGAGCTACAATGGAATCGACAACATTCTCGAAACCAAAAACGATGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGTTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCACAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACTCTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTAGCAAACTCATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCAGAGTTTTATGTGCCCGATCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAGGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAATCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAG 1803 46.48 MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFSVRRYLRDMDINNSSTLFNVTLQRKGGYVIMDNGIVLVTLSTPDGDVIGLSYNGIDNILETKNDEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSTMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYSFPQSEDFPSSAQRGSVTGRLLVRDGYISSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTRDWFYAHVNRNVGNQTYQSTTWEIRFLLQSVNQTANYTLQIALASAAECELQ 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15118865 15129925 + ClG42_10g0083300.10 Clacu10g0833 259457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0833 601 FunFam Rhamnogalacturonate lyase B 374 473 - -
Clacu10g0833 601 SUPERFAMILY Galactose mutarotase-like 65 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Clacu10g0833 601 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
Clacu10g0833 601 CDD RGL4_M 377 473 IPR029413 -
Clacu10g0833 601 CDD RGL4_N 60 344 - -
Clacu10g0833 601 Gene3D - 484 601 - -
Clacu10g0833 601 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 601 IPR051850 -
Clacu10g0833 601 Gene3D - 52 342 IPR014718 GO:0030246(InterPro)
Clacu10g0833 601 Pfam Polysaccharide lyase family 4, domain III 486 598 IPR029411 -
Clacu10g0833 601 Gene3D - 374 476 - -
Clacu10g0833 601 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Clacu10g0833 601 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Clacu10g0833 601 SUPERFAMILY Galactose-binding domain-like 484 597 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0833 Clacu-Chr10:15118865 Clacu11g1655 Clacu-Chr11:27769025 4.20E-199 dispersed
Clacu10g0833 Clacu-Chr10:15118865 Clacu01g1892 Clacu-Chr1:31065805 1.30E-213 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0833 K18195 - csv:101215252 1116.68