Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0841 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTACACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCACTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATTGATGTCAACAACAAGATGATGATGATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATCGACAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTCAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGTCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCAGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTACGCCTCACTTTTACAACCCCTTCTCCAGTCCTTCCGCCGCATGTTAG 837 45.16 MGLDDFCQTGLVLGLGLSNDQRLKKKPTPCSSSSLDFEPCALTLGFSGTGGGSETHQKVIDVNNKMMMINNNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVQLDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKSLKLAQPLYMQMPAATLTICPSCERLGSGGGASKPKFSMAPTPHFYNPFSSPSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16316330 16317397 - ClG42_10g0084100.10 Clacu10g0841 259465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0841 278 MobiDBLite consensus disorder prediction 102 137 - -
Clacu10g0841 278 SMART halz 191 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0841 278 FunFam Homeobox-leucine zipper protein 18 121 196 - -
Clacu10g0841 278 Pfam Homeobox associated leucine zipper 191 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0841 278 CDD homeodomain 135 192 IPR001356 GO:0003677(InterPro)
Clacu10g0841 278 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu10g0841 278 Coils Coil 197 227 - -
Clacu10g0841 278 MobiDBLite consensus disorder prediction 81 137 - -
Clacu10g0841 278 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Clacu10g0841 278 SMART HOX_1 133 195 IPR001356 GO:0003677(InterPro)
Clacu10g0841 278 SUPERFAMILY Homeodomain-like 122 192 IPR009057 -
Clacu10g0841 278 Gene3D - 139 189 - -
Clacu10g0841 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 270 IPR050762 -
Clacu10g0841 278 Pfam Homeodomain 135 189 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1858 Clacu-Chr1:30745039 Clacu10g0841 Clacu-Chr10:16316330 7.40E-76 dispersed
Clacu05g1923 Clacu-Chr5:28443242 Clacu10g0841 Clacu-Chr10:16316330 1.40E-50 dispersed
Clacu06g1491 Clacu-Chr6:25842700 Clacu10g0841 Clacu-Chr10:16316330 4.10E-40 dispersed
Clacu10g0841 Clacu-Chr10:16316330 Clacu10g1746 Clacu-Chr10:31003534 1.90E-50 dispersed
Clacu10g0841 Clacu-Chr10:16316330 Clacu09g0379 Clacu-Chr9:3340058 3.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48471 PF00046 Homeodomain 5.20E-16 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0841 K09338 - csv:101205848 370.548