Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0865 ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.98 MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17950168 17950758 + ClG42_10g0086500.10 Clacu10g0865 259489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0865 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Clacu10g0865 196 Gene3D - 121 191 - -
Clacu10g0865 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Clacu10g0865 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Clacu10g0865 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Clacu10g0865 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Clacu10g0865 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu10g0865 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1662 Clacu-Chr8:26322375 Clacu10g0865 Clacu-Chr10:17950168 6.70E-39 dispersed
Clacu09g1867 Clacu-Chr9:33415414 Clacu10g0865 Clacu-Chr10:17950168 1.10E-35 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu11g0158 Clacu-Chr11:1184217 6.60E-37 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu01g1917 Clacu-Chr1:31270011 3.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48473 PF04770 ZF-HD_dimer 4.60E-28 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0865 - - - 0.0