Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0900 ATGGGTATTTGCCCATGTTCGAAAATATGTTTATCTGAGTTGTTTTTACTCCACAATCAAGTTAACTGCCATCTCTTTTCGAGAAGAGCGTGCTATTCTTCCTTGTCGGTGTTGTTGGTGGAAGACCACGTGTTTGATGAAAGTCCAGTAGCTCAAATTAAAGTTCTTCCTGAAATTAACGTCAGAAGAAACTGTTCAATTCTTAGGAGGAAGGGGAAGCTCTTTCCTTTAGTTGTTCGGGTTCTAAAATCTTTGAACTGGAGGGTTGCGAGGCAGATAAGATTCTCAACAGCCGTGAAACGTTATGGGCATTTGAACTCTCTATGTGCATTTAGAATTATGGTTCATGTATTTGCATTAGCGGAAATGCGGATGGAAGTCTACTCTCTTCTTAAAGATATCGTTTGCCACACTAGGAAGGCTAAGCAAGATTTATCTGGATTGTTCCCATTTCTTATGGACTCGAATTATGATGTGGAGAAGTCAAGTATCGTGCTTGACCTGCTTATAAAGGTTTTCTCTGGAAATTCAATGGTTGAGAATGCTGTGGAAGTGTTTATTCAAGCCAAGAAAATGGGAATCATGCCAGATATTTCGTCATGCAATTTTTTGCTCAAGTGCTTGGGTGAAGCAAACAGAGAGGATTTTGTTAGATGTTTGTTTGAGGATTTGAAGACTTCTGGCCCAAATCCTACTGTATATACCTACACAATTATGATGAACTTCTTTTGCCAAGGATTAAATGGGCGTGATGTCAACATTAAAGAAGCAACCTTTCTTCTAGAGGAATTAATGAGGAGTGGTGAGAGACCCACTGTTGTAACGTACAGCATTTACATCCGTGCACTTTGTAAAGTTGTTTCTGGTCAGTCTGCTTTGGACTTCATTCAAGATCTGAGACTCAAGAACCAACCTCTTAATGCTTATTGTTACAATCCAATTCTTCATAAATTTTGTCAAGAGGGTAAGACGGAGGAAGCTATGAAGGTTTTGCAGGAAATGATGGGTTATGGAATACTACCAGATGCATGTAGTTATAGTATTTTGGTTGATGGGTTCTGCAAGAGAGGGGAAAATGATAAAGGTCTCAATCTGATTGAGGAAATGGAACTTTGTCAACTAAAACCATCCCTAGTCACCTATTCATCTCTGATTTATGGTCTTTGTAAGAGAGGATTGATGGATCTCTCCCTAGATATTTTTCGTAAACTTCAGAAACTTGGTTACAAATATGACTTGGTTGTTTATGACATTTTGATCAGAGGATTTTTTTCTCACGATGATATGGAGTATGCTAAAAAACTTTTGGATGAGATGATGGGTACTGCAGAGAAGGGAACTTGGAGGAGGCCCTGA 1356 38.94 MGICPCSKICLSELFLLHNQVNCHLFSRRACYSSLSVLLVEDHVFDESPVAQIKVLPEINVRRNCSILRRKGKLFPLVVRVLKSLNWRVARQIRFSTAVKRYGHLNSLCAFRIMVHVFALAEMRMEVYSLLKDIVCHTRKAKQDLSGLFPFLMDSNYDVEKSSIVLDLLIKVFSGNSMVENAVEVFIQAKKMGIMPDISSCNFLLKCLGEANREDFVRCLFEDLKTSGPNPTVYTYTIMMNFFCQGLNGRDVNIKEATFLLEELMRSGERPTVVTYSIYIRALCKVVSGQSALDFIQDLRLKNQPLNAYCYNPILHKFCQEGKTEEAMKVLQEMMGYGILPDACSYSILVDGFCKRGENDKGLNLIEEMELCQLKPSLVTYSSLIYGLCKRGLMDLSLDIFRKLQKLGYKYDLVVYDILIRGFFSHDDMEYAKKLLDEMMGTAEKGTWRRP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18753344 18754850 - ClG42_10g0090000.10 Clacu10g0900 259524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0900 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Clacu10g0900 451 Gene3D Tetratricopeptide repeat domain 60 226 IPR011990 GO:0005515(InterPro)
Clacu10g0900 451 Gene3D Tetratricopeptide repeat domain 373 442 IPR011990 GO:0005515(InterPro)
Clacu10g0900 451 Gene3D Tetratricopeptide repeat domain 227 299 IPR011990 GO:0005515(InterPro)
Clacu10g0900 451 Gene3D Tetratricopeptide repeat domain 300 372 IPR011990 GO:0005515(InterPro)
Clacu10g0900 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Clacu10g0900 451 Pfam PPR repeat family 307 355 IPR002885 -
Clacu10g0900 451 Pfam PPR repeat family 376 423 IPR002885 -
Clacu10g0900 451 Pfam PPR repeat family 196 245 IPR002885 -
Clacu10g0900 451 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Clacu10g0900 451 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Clacu10g0900 451 NCBIfam pentatricopeptide repeat 414 440 IPR002885 -
Clacu10g0900 451 NCBIfam pentatricopeptide repeat 345 377 IPR002885 -
Clacu10g0900 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 292 441 - -
Clacu10g0900 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0900 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1067 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00855 Cam10g0875 Cec10g0905 Cco10g0858 Clacu10g0900 Cmu10g1692 Cre10g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003935 0 8 0 0 1 1 1 1 1 0 1 1 1 0 0 1 1 0 1 1 0 0 1 1 0 1 1 1 0 1 26