Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0919 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTCGCTGATCCTGGCAACAGTGTAGCATCACCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGACCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTACATTGTCTAACACGCAAGTTAGAACTCCAACCTCGCCGCCTCTTCCTGGGATAATAAAAGCTCGCGTCAAGCACGAACATTAA 1044 47.61 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPLPTLSNTQVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19086358 19090568 - ClG42_10g0091900.10 Clacu10g0919 259543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0919 347 MobiDBLite consensus disorder prediction 1 95 - -
Clacu10g0919 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu10g0919 347 PANTHER TRANSCRIPTION FACTOR DP 24 319 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Clacu10g0919 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Clacu10g0919 347 MobiDBLite consensus disorder prediction 22 60 - -
Clacu10g0919 347 FunFam Transcription factor-like protein DPB 87 180 - -
Clacu10g0919 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu10g0919 347 FunFam Transcription factor-like protein DPB 181 306 - -
Clacu10g0919 347 Gene3D - 88 180 IPR036388 -
Clacu10g0919 347 Coils Coil 191 225 - -
Clacu10g0919 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Clacu10g0919 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Clacu10g0919 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Clacu10g0919 347 SMART DP_2 182 345 IPR014889 -
Clacu10g0919 347 CDD DP_DD 180 283 IPR014889 -
Clacu10g0919 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0919 K04683 - - csv:101216863 665.996
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g1485 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
Clacu10g0919 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Clacu02g2289 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.5e-119 426.8
Clacu04g1090 . 11 465 E2F-DP Transcription Factor Family AT2G36010 54.4 4.5e-119 425.2
Clacu02g2289 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.4e-115 411.4
Clacu04g1090 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Clacu08g1601 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Clacu08g1601 . 151 410 E2F-DP Transcription Factor Family AT1G47870 53.8 1.6e-66 250.4
Clacu02g2289 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Clacu10g0919 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Clacu02g2289 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.4e-115 411.4
Clacu04g1090 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Clacu08g1601 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Clacu02g2289 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.5e-119 426.8
Clacu04g1090 . 11 465 E2F-DP Transcription Factor Family AT2G36010 54.4 4.5e-119 425.2
Clacu08g1601 . 151 410 E2F-DP Transcription Factor Family AT1G47870 53.8 1.6e-66 250.4
Clacu02g2289 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Clacu01g1485 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48475 PF08781 DP 4.00E-41 No_clan Clacu TF