Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0923 ATGTCATCGGAAAATTCATCCGAAGAACCGGCCATAGACAGCCGTAGTCGCCGATCAATCAGTGCAGTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAATTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTACGGGTGATGCTAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACTATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCTGGTGAGATAG 1740 42.53 MSSENSSEEPAIDSRSRRSISAVERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGDANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGSGSSLNVSGSQLEAQERFLQQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSALSSSSSDSHRPGETESLVR 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19150347 19158723 + ClG42_10g0092300.10 Clacu10g0923 259547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0923 579 MobiDBLite consensus disorder prediction 365 401 - -
Clacu10g0923 579 MobiDBLite consensus disorder prediction 535 579 - -
Clacu10g0923 579 MobiDBLite consensus disorder prediction 538 552 - -
Clacu10g0923 579 MobiDBLite consensus disorder prediction 371 401 - -
Clacu10g0923 579 SMART ring_2 317 354 IPR001841 -
Clacu10g0923 579 MobiDBLite consensus disorder prediction 553 571 - -
Clacu10g0923 579 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 289 364 - -
Clacu10g0923 579 Pfam Ring finger domain 316 355 IPR001841 -
Clacu10g0923 579 PANTHER RING ZINC FINGER PROTEIN 18 362 IPR050731 -
Clacu10g0923 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 360 IPR013083 -
Clacu10g0923 579 Coils Coil 511 531 - -
Clacu10g0923 579 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Clacu10g0923 579 SUPERFAMILY RING/U-box 297 362 - -
Clacu10g0923 579 CDD RING-H2_synoviolin 314 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1384 Clacu-Chr9:18060180 Clacu10g0923 Clacu-Chr10:19150347 5.30E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0923 K10601 - csv:101215351 971.074