Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0924 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCGTTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCGGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCAGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTCAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGTCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGACGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 45.17 MSVMLGSCSSSLWIVFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19182386 19189407 + ClG42_10g0092400.10 Clacu10g0924 259548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0924 613 SUPERFAMILY L domain-like 28 203 - -
Clacu10g0924 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Clacu10g0924 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Clacu10g0924 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Clacu10g0924 613 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Clacu10g0924 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0924 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0924 613 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Clacu10g0924 613 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Clacu10g0924 613 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Clacu10g0924 613 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Clacu10g0924 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Clacu10g0924 613 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0924 613 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0924 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Clacu10g0924 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Clacu10g0924 613 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Clacu10g0924 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Clacu10g0924 613 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Clacu10g0924 613 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Clacu10g0924 613 MobiDBLite consensus disorder prediction 580 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0180 Clacu-Chr6:2018620 Clacu10g0924 Clacu-Chr10:19182386 5.30E-30 dispersed
Clacu08g1943 Clacu-Chr8:28435414 Clacu10g0924 Clacu-Chr10:19182386 1.00E-139 dispersed
Clacu10g0924 Clacu-Chr10:19182386 Clacu11g0656 Clacu-Chr11:6304090 9.90E-132 dispersed
Clacu10g0924 Clacu-Chr10:19182386 Clacu10g0927 Clacu-Chr10:19204721 3.90E-30 proximal
Clacu02g0713 Clacu-Chr2:7360010 Clacu10g0924 Clacu-Chr10:19182386 5.80E-31 transposed
Clacu03g1452 Clacu-Chr3:28062565 Clacu10g0924 Clacu-Chr10:19182386 7.40E-29 transposed
Clacu07g0931 Clacu-Chr7:23276338 Clacu10g0924 Clacu-Chr10:19182386 9.00E-205 transposed
Clacu08g0459 Clacu-Chr8:7191733 Clacu10g0924 Clacu-Chr10:19182386 1.70E-227 transposed
Clacu09g1579 Clacu-Chr9:27018344 Clacu10g0924 Clacu-Chr10:19182386 5.30E-209 transposed
Clacu10g0924 Clacu-Chr10:19182386 Clacu02g1227 Clacu-Chr2:24815846 4.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73877 PF00069 Pkinase 2.30E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0924 K13416 - csv:101216389 1129.01