Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0936 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCTAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACCGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACCGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCACGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAACGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 852 44.95 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMTNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19464231 19468094 + ClG42_10g0093600.10 Clacu10g0936 259560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0936 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Clacu10g0936 283 Gene3D - 30 283 IPR036457 -
Clacu10g0936 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Clacu10g0936 283 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu10g0936 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Clacu10g0936 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Clacu10g0936 283 CDD PP2Cc 34 281 IPR001932 -
Clacu10g0936 283 SUPERFAMILY PP2C-like 30 282 IPR036457 -
Clacu10g0936 283 SMART PP2C_4 30 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0717 Clacu-Chr6:8379695 Clacu10g0936 Clacu-Chr10:19464231 1.00E-19 dispersed
Clacu10g0936 Clacu-Chr10:19464231 Clacu11g1596 Clacu-Chr11:27124233 9.00E-120 dispersed
Clacu10g0936 Clacu-Chr10:19464231 Clacu02g1241 Clacu-Chr2:24995670 1.50E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0936 K17506 - csv:101214223 548.895