Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0966 | ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA | 663 | 38.91 | MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 20956602 | 20963858 | + | ClG42_10g0096600.10 | Clacu10g0966 | 259590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0966 | 220 | Pfam | K-box region | 88 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu10g0966 | 220 | Coils | Coil | 149 | 183 | - | - | |
Clacu10g0966 | 220 | MobiDBLite | consensus disorder prediction | 187 | 220 | - | - | |
Clacu10g0966 | 220 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | Coils | Coil | 123 | 143 | - | - | |
Clacu10g0966 | 220 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | CDD | MADS_MEF2_like | 3 | 69 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Clacu10g0966 | 220 | SUPERFAMILY | SRF-like | 2 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 202 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Clacu10g0966 | 220 | Gene3D | - | 15 | 74 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Clacu10g0966 | 220 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Clacu10g0966 | 220 | MobiDBLite | consensus disorder prediction | 188 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g1325 | Clacu-Chr8:23236709 | Clacu10g0966 | Clacu-Chr10:20956602 | 1.70E-45 | dispersed | |
Clacu10g0966 | Clacu-Chr10:20956602 | Clacu11g1657 | Clacu-Chr11:27790692 | 3.20E-24 | dispersed | |
Clacu01g1907 | Clacu-Chr1:31162491 | Clacu10g0966 | Clacu-Chr10:20956602 | 6.10E-47 | wgd | |
Clacu10g0966 | Clacu-Chr10:20956602 | Clacu02g1285 | Clacu-Chr2:25658619 | 1.70E-12 | wgd | |
Clacu10g0966 | Clacu-Chr10:20956602 | Clacu09g1669 | Clacu-Chr9:29613770 | 2.70E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48476 | PF01486 | K-box | 6.20E-16 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0966 | - | - | - | 0.0 |