Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0966 ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA 663 38.91 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL 220
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 20956602 20963858 + ClG42_10g0096600.10 Clacu10g0966 259590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0966 220 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu10g0966 220 Coils Coil 149 183 - -
Clacu10g0966 220 MobiDBLite consensus disorder prediction 187 220 - -
Clacu10g0966 220 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 Coils Coil 123 143 - -
Clacu10g0966 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu10g0966 220 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu10g0966 220 Gene3D - 15 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g0966 220 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu10g0966 220 MobiDBLite consensus disorder prediction 188 212 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1325 Clacu-Chr8:23236709 Clacu10g0966 Clacu-Chr10:20956602 1.70E-45 dispersed
Clacu10g0966 Clacu-Chr10:20956602 Clacu11g1657 Clacu-Chr11:27790692 3.20E-24 dispersed
Clacu01g1907 Clacu-Chr1:31162491 Clacu10g0966 Clacu-Chr10:20956602 6.10E-47 wgd
Clacu10g0966 Clacu-Chr10:20956602 Clacu02g1285 Clacu-Chr2:25658619 1.70E-12 wgd
Clacu10g0966 Clacu-Chr10:20956602 Clacu09g1669 Clacu-Chr9:29613770 2.70E-31 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48476 PF01486 K-box 6.20E-16 No_clan Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0966 - - - 0.0