Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0988 ATAAGATCGATTACTGATCGCTACAACAAGATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGCACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATGACATATGA 555 40.0 IRSITDRYNKMKDEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLGYVLAICVHDI 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21301629 21308381 - ClG42_10g0098800.10 Clacu10g0988 259612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0988 184 Coils Coil 11 38 - -
Clacu10g0988 184 Pfam K-box region 22 109 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu10g0988 184 Coils Coil 102 122 - -
Clacu10g0988 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu10g0988 184 ProSiteProfiles K-box domain profile. 25 115 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0988 K09264 - - csv:101203098 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1209 Clacu-Chr8:22017787 Clacu10g0988 Clacu-Chr10:21301629 1.00E-08 dispersed
Clacu10g0988 Clacu-Chr10:21301629 Clacu11g1657 Clacu-Chr11:27790692 2.10E-32 dispersed
Clacu01g1891 Clacu-Chr1:31052607 Clacu10g0988 Clacu-Chr10:21301629 4.00E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g838 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00943 Cam10g0965 Cec10g1000 Cco10g0961 Clacu10g0988 Cmu10g1771 Cre10g1145 . . . Cone10ag1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00982 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112