Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1019 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGATGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTGGGAAAAAAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAAATAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 984 44.92 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLEIAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21901626 21907651 + ClG42_10g0101900.10 Clacu10g1019 259643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1019 327 Coils Coil 270 307 - -
Clacu10g1019 327 CDD SANT_TRF 6 56 - -
Clacu10g1019 327 MobiDBLite consensus disorder prediction 92 134 - -
Clacu10g1019 327 PANTHER SINGLE MYB HISTONE 4 1 321 IPR044597 GO:0003691(InterPro)
Clacu10g1019 327 SUPERFAMILY Winged helix DNA-binding domain 153 224 IPR036390 -
Clacu10g1019 327 Gene3D - 2 59 - -
Clacu10g1019 327 SMART h15plus2 148 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu10g1019 327 Coils Coil 120 142 - -
Clacu10g1019 327 Gene3D - 151 226 IPR036388 -
Clacu10g1019 327 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Clacu10g1019 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Clacu10g1019 327 SMART sant 4 59 IPR001005 -
Clacu10g1019 327 FunFam Telomere repeat-binding factor 1 2 58 - -
Clacu10g1019 327 Pfam linker histone H1 and H5 family 154 211 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu10g1019 327 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Clacu10g1019 327 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Clacu10g1019 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 218 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu10g1019 327 FunFam Telomere repeat-binding factor 1 8 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0062 Clacu-Chr7:990603 Clacu10g1019 Clacu-Chr10:21901626 3.00E-06 dispersed
Clacu01g1832 Clacu-Chr1:30466358 Clacu10g1019 Clacu-Chr10:21901626 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48478 PF00538 Linker_histone 1.30E-07 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1019 K09422 - csv:101218411 499.204