Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1039 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACGAAGATAACGGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCGCATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCGATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1092 43.32 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDRIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22265571 22267340 - ClG42_10g0103900.10 Clacu10g1039 259663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1039 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Clacu10g1039 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Clacu10g1039 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu10g1039 363 CDD bHLH_AtIND_like 276 338 - -
Clacu10g1039 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Clacu10g1039 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Clacu10g1039 363 MobiDBLite consensus disorder prediction 142 286 - -
Clacu10g1039 363 MobiDBLite consensus disorder prediction 167 185 - -
Clacu10g1039 363 MobiDBLite consensus disorder prediction 218 279 - -
Clacu10g1039 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Clacu10g1039 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0858 Clacu-Chr3:10227376 Clacu10g1039 Clacu-Chr10:22265571 2.10E-18 dispersed
Clacu05g2250 Clacu-Chr5:30921332 Clacu10g1039 Clacu-Chr10:22265571 1.60E-38 dispersed
Clacu07g1350 Clacu-Chr7:28328435 Clacu10g1039 Clacu-Chr10:22265571 1.60E-11 dispersed
Clacu08g1804 Clacu-Chr8:27353810 Clacu10g1039 Clacu-Chr10:22265571 1.70E-37 dispersed
Clacu09g0042 Clacu-Chr9:482942 Clacu10g1039 Clacu-Chr10:22265571 1.20E-12 dispersed
Clacu10g1039 Clacu-Chr10:22265571 Clacu11g1844 Clacu-Chr11:29565815 1.80E-08 dispersed
Clacu10g1039 Clacu-Chr10:22265571 Clacu02g0721 Clacu-Chr2:7480653 1.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48479 PF00010 HLH 7.70E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1039 - - - 0.0