Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1040 ATGACAGCCGTCCCTCCTCCGGCTGCTGGCCGGGAGCTTTCAAATCCTCCCTCCGACGGCATTTCCAATCTCCGTTTCTCCAACCACAGTGATCACTTACTTGTTTCCTCTTGGGACAAGACTGTCCGCTTGTACGACGCCAGCGCCAACGTCCTCCGCGGTGAGTTCGTACATGGTGGTCCTGTCCTCGACTGTTGTTTCCACGACGATTCTTCTGGATTCAGTGCCAGTGTTGACAACACCGTCAGGAGACTTGTTTTCAACCATAATAAGGAGGACATATTAGGGAGGCATGATGCACCTGTACGGTGCGTTGAGTATTCTTATGCGGCAGGTCAATTAATTACTGGCAGTTGGGATAAAACACTGAAGTGTTGGGATCCTAGAGGTGCAAGTGGGCAGGAACATACTCTCGTTGGAACATATCCTCAGCCTGAGCGTGTTTACTCACTTTCTCTTGTGGGGAATCGTTTAGTTGTAGCAACTGCTGGAAGGCATGTTAATGTCTACGACTTGAGAAACATGTCTCAACCCGAGCAAAGAAGGGAATCCTCGTTGAAATATCAGACTCGATGTGTGCGTTGTTATCCAAATGGAACAGGCTATGCTCTTAGTTCAGTTGAAGGACGAGTTGCTATGGAGTTTTTTGATCCCTCAGAGGCCAGTCAAGCCAAAAAGTATGCATTCAAATGTCACAGAAAATCAGAGGCTGGAAGGGACATAGTCTATCCGGTCAATGCCATTGCATTCCATCCTATCTACGGTACTTTTGCAACGGGAGGTTGTGATGGGTACGTAAATGTTTGGGATGGGAACAACAAGAAGAGGCTTTATCAGGCAAGATTTTTCTGCCATGAACTAATATTTCTGCTTCTGTCCACAGCCAATAGAGTGAGAGAAAGTGGAGGATGTGAGTTGGGTGAAGATCCAAGCAGGAATGGGGCCAAGAAGCTTTTCGGGCATGCAAAGACATCATACCATTGCAATAATTGGGCAACATCCAAAAGGGCTCTTTCTTTGGGGGGATTGAGGAAACTTGAAGCTCACTTCTTGCTTGTCAAGATGAAGTTCATGAAACTTGGATCAAAATCTGATAGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTAGGTGAATTAGCAACAGACATCACTGTTATTGTAGGGGATGTCAAGTTTTACCTCCATAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACAGCTGCCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCGGGTGGTTCTGCAGCATTTGAGATATGTGCCAAATTCTGTTATGGGATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAGTTGAAAAGGGAAACCTCACCTACAAAATCGACGTTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCCACAAAGGCGTTAATGCCATTATCTGAGGAACTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCTGAGGAAAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGTGTGCCGAAGGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAACGAGTATAAAAAACAAAGGAATAGTCCCTAATGATGTGATTGGAGAAGCACTGAAAGCTTATGCTTACCGTTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCACTGAAGTATCAGTCGGCAGTGTCGACAATTGTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCATCCATTTTCCTAGCATCTGGAGATGAGACCAAAGAAGAGCTCGTTCGACGAATGGGACAGCAGCTAGAGGAGGCTATAGTGAGTGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTACAAGATCATAGTAGCGAAATCGAGTCACTTGAAGAGGTAAATGAGCTTCGGGAGCCAAGAGGGCCAGGGATTTTATCGGATGCTACTAAGTTGATGGTGGCAAAATTGATTGATGGTTACCTTGCTGAAGTTGCAAAAGATCCCAACCTATCATCAGTAAAGTTCATTGATCTTGCAGAGATGGTATCTTGCATCGCTCGGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCCGCTGATGCGTGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTGTTTTTTGAGCAAGTCAGGGCCTCAGCATCATCAGGCAGCAGCACTCCCGACCTACATAAAGGCATCAAGGATCTAACGAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAATCCCGAGGAAGATTGGGATGCTGTTGCCATGGCTGAGGAGCTCAAGGCTCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTACTGGTAAAGGAAGTAATGAGAGGAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATATGGCGAAAACAGTGGCTCGGATTCATCGGAGAGCCTTGGTTCTGCAAATCAGGAGGAAGCTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 2943 45.46 MTAVPPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSASVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQARFFCHELIFLLLSTANRVRESGGCELGEDPSRNGAKKLFGHAKTSYHCNNWATSKRALSLGGLRKLEAHFLLVKMKFMKLGSKSDSFQNDGTNVRYVVGELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETVEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVITSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGSVSSSFLSKLLKASIFLASGDETKEELVRRMGQQLEEAIVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQDHSSEIESLEEVNELREPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLSSVKFIDLAEMVSCIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLHKGIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLATGKGSNERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22294985 22309230 + ClG42_10g0104000.10 Clacu10g1040 259664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1040 980 ProSiteProfiles NPH3 domain profile. 564 842 IPR027356 -
Clacu10g1040 980 Pfam NPH3 family 564 818 IPR027356 -
Clacu10g1040 980 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Clacu10g1040 980 MobiDBLite consensus disorder prediction 846 878 - -
Clacu10g1040 980 Pfam BTB/POZ domain 382 472 IPR000210 GO:0005515(InterPro)
Clacu10g1040 980 MobiDBLite consensus disorder prediction 943 980 - -
Clacu10g1040 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SMART WD40_4 135 171 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SMART WD40_4 6 46 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SMART WD40_4 88 127 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SMART WD40_4 222 270 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SMART WD40_4 49 86 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 SUPERFAMILY POZ domain 376 471 IPR011333 -
Clacu10g1040 980 Coils Coil 882 902 - -
Clacu10g1040 980 ProSiteProfiles BTB domain profile. 383 451 IPR000210 GO:0005515(InterPro)
Clacu10g1040 980 PANTHER OS12G0117600 PROTEIN 380 903 IPR043454 -
Clacu10g1040 980 SUPERFAMILY WD40 repeat-like 16 282 IPR036322 GO:0005515(InterPro)
Clacu10g1040 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 MobiDBLite consensus disorder prediction 944 968 - -
Clacu10g1040 980 Pfam WD domain, G-beta repeat 18 46 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 Pfam WD domain, G-beta repeat 58 83 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 Pfam WD domain, G-beta repeat 244 270 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515(InterPro)
Clacu10g1040 980 Gene3D - 10 298 IPR015943 GO:0005515(InterPro)
Clacu10g1040 980 Gene3D Potassium Channel Kv1.1; Chain A 362 475 IPR011333 -
Clacu10g1040 980 MobiDBLite consensus disorder prediction 861 876 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1040 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1531 Clacu-Chr8:25209921 Clacu10g1040 Clacu-Chr10:22294985 2.30E-148 dispersed
Clacu10g1040 Clacu-Chr10:22294985 Clacu10g2000 Clacu-Chr10:33511222 4.40E-89 dispersed
Clacu01g1188 Clacu-Chr1:18059656 Clacu10g1040 Clacu-Chr10:22294985 3.10E-95 transposed
Clacu01g2186 Clacu-Chr1:33256160 Clacu10g1040 Clacu-Chr10:22294985 1.90E-106 transposed
Clacu01g1820 Clacu-Chr1:30364016 Clacu10g1040 Clacu-Chr10:22294985 5.20E-222 wgd
Clacu10g1040 Clacu-Chr10:22294985 Clacu09g0617 Clacu-Chr9:5320422 1.60E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79