Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1060 ATGGCTAATCGGAGCTCCGAACAAGTATCCGATGCCATTCCCGACATGTCGTCATCCGACACAATCGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTTGCACTGTCGGTGTCGGAGAGGAAACTGTCATGGCAAAAGCTCCGACGATTCGACTCGTTGGATTTAGAGTCACGTAAACTCCATGGTCATGATGATGATCATCATTCCTATGCCAAGGAGAAGAAATGGAGTGTAATCTTACACTTAGCATTCCAAAGCATCGGCATAGTTTACGGCGACATCGGAACGTCGCCGTTGTACGTGTTCTCGAGCACATTTCCAGATGGAATAAAGCACAACGACGATATTTTAGGGGCGTTGTCGTTGATCGTTTACACCATAACTTTGATTCCTGTAATCAAGTATGTGTTTATTGTTTTGAGAGCAAACGACAATGGAGAAGGGGGAACCTTTGCATTGTACTCATTGATATGTCGATATGCAAAAGTGGGATTGATTCCGAATGCGGAGATTGAGGATCGAGAAGTGTCGAATTATCAATTAAGTTTGCCGAATGAAAGAGAGAAGAGAGCTTCAAGGATTCAATCAAAGCTAGAGAAAAGCCATTTTGCAAAGGTGTTTCTTCTATTTGCAACTATGCTTGGGACTTCCATGGTCATTGGAGATGGTGTTCTCACTCCTTGTATCTCAGTGTTATCTGCTGTGGGAGGGATCAAGGAGGCTACCCCTGCAATGACAGAAGGTAAGATTGTCTGGGCATCAGTAGGCATATTGGTGTGCCTATTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTACACTTTTGCTCCAATTATCCTCATTTGGTTTGCTTTCAATGCTGGAATTGGTATCTACAACTTCATAAAATATGACCCAACTGTCATTAAAGCCTTAAATCCAAACTACATTTTTCAATACTTCCAAAGGAACAAAAAGGATGCTTGGATTTCTCTTGGTGGCATTGTTCTTGCCATTACAGGGACCGAAGCCTTGTTCGCCGACGTCGGGCATTTCAGCGTCCGATCGATCCAGCTAAGCATGTCAGCAGTGACCTACCCAGCTCTAATATTTGCTTACATAGGCCAAGCTTCGTTTCTTCGCAAGCATGATGATCTAGTGTCGGACACATTCTACAAGTCAATTCCTGGAAGTTTGTATTGGCCAGTGTTTGTTGTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCAATGATTTCAGGAACATTCTCAATAATTCAACAATCACTTTCACTTGGATGCTTCCCAAGAGTTAAAGTGGTTCATACATCAGCTAAGTATGAAGGGCAAGTTTATGTTCCTGAGATAAATTACCTTTTGATGTTGGCTTGTGTTGGTGTTACTTTGGGGTTCAAGAACACTACAAAGATTGGGAATGCATATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCTTTCTTAGTACTCGTTATGGTTATGATATGGAAAACTCATATCCTTTTCATAATCGCTTACATTCTCATCATTGGTAGTGTGGAATTGGTGTATTTGAGTTCAGTCCTTTACAAGTTTGACCAAGGAGGCTATCTTCCTTTGGCTTTTGCAGCTGCTTTGATGACAATCATGTATGTGTGGAATAGTGTGTTTAGAAAGAAGTACTTTTATGAGCTCAATAACAAAATCTCTACAGAAAAGCTCAATGGGATGGTGAATGCCACCAACTTTAGAAGAATTCCAGGCATTGCATTCTTCTACTCTGAGCTTGTTCAAGGCATCCCTCCCATCTTCAAGCATTACGTCGACCACATTCCTGCACTGCATTCTGTGCTCGTCTTCATCACCATTAAATCGCTTCCTGTGAGCAAGGTTCCGGCAGATGAACGTTTTCTCTTCCGACAAGTAGAGGCGAAGGAGATCGACGTGTTTCGTTGTGTTGTTCGATACGGGTACACGGATGTGCAGACAGAACAAGAATCGTTTGAGAAGATATTGATTGAAAGATTGGAAGAGTTCGAGAGAGAACGACGTAGATTGGTTAAAGGGGCAAATAAAGTTGAAAATGAGAATGAGGATGAGAAAGGATTTGGAGGAATTGGAGAAGCATGGAAGGATGGAGTTGTTCATTTAGTTGGTGAAAGTGAAGTGGTTGCTAAAAAAGGGGCAAGCTTTGGGCAGAGAATGATGATAAACTATGCATATAGCTTCTTGAAGAGGAATTTGAGGCAAACCGATCAAGTATTTGATATTCCTCGCAAGCATATGCTCAAAGTAGGAATGACTTGTGAACTTTAG 2307 41.79 MANRSSEQVSDAIPDMSSSDTIVKEEEEEEEEEVVALSVSERKLSWQKLRRFDSLDLESRKLHGHDDDHHSYAKEKKWSVILHLAFQSIGIVYGDIGTSPLYVFSSTFPDGIKHNDDILGALSLIVYTITLIPVIKYVFIVLRANDNGEGGTFALYSLICRYAKVGLIPNAEIEDREVSNYQLSLPNEREKRASRIQSKLEKSHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEATPAMTEGKIVWASVGILVCLFMVQRFGTDKVGYTFAPIILIWFAFNAGIGIYNFIKYDPTVIKALNPNYIFQYFQRNKKDAWISLGGIVLAITGTEALFADVGHFSVRSIQLSMSAVTYPALIFAYIGQASFLRKHDDLVSDTFYKSIPGSLYWPVFVVAVSASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSAKYEGQVYVPEINYLLMLACVGVTLGFKNTTKIGNAYGIAVVFVMTLTSSFLVLVMVMIWKTHILFIIAYILIIGSVELVYLSSVLYKFDQGGYLPLAFAAALMTIMYVWNSVFRKKYFYELNNKISTEKLNGMVNATNFRRIPGIAFFYSELVQGIPPIFKHYVDHIPALHSVLVFITIKSLPVSKVPADERFLFRQVEAKEIDVFRCVVRYGYTDVQTEQESFEKILIERLEEFERERRRLVKGANKVENENEDEKGFGGIGEAWKDGVVHLVGESEVVAKKGASFGQRMMINYAYSFLKRNLRQTDQVFDIPRKHMLKVGMTCEL 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22538122 22543951 + ClG42_10g0106000.10 Clacu10g1060 259684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1060 768 MobiDBLite consensus disorder prediction 1 31 - -
Clacu10g1060 768 MobiDBLite consensus disorder prediction 1 17 - -
Clacu10g1060 768 Pfam K+ potassium transporter integral membrane domain 84 570 IPR053951 -
Clacu10g1060 768 Pfam K+ potassium transporter C-terminal domain 584 768 IPR053952 -
Clacu10g1060 768 NCBIfam potassium uptake protein 84 767 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu10g1060 768 Coils Coil 673 693 - -
Clacu10g1060 768 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 64 767 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0606 Clacu-Chr9:5179953 Clacu10g1060 Clacu-Chr10:22538122 4.70E-301 dispersed
Clacu10g1060 Clacu-Chr10:22538122 Clacu10g1431 Clacu-Chr10:27452568 8.30E-168 dispersed
Clacu07g1207 Clacu-Chr7:26945961 Clacu10g1060 Clacu-Chr10:22538122 5.30E-226 transposed
Clacu10g0932 Clacu-Chr10:19279648 Clacu10g1060 Clacu-Chr10:22538122 3.00E-161 transposed
Clacu11g0182 Clacu-Chr11:1531686 Clacu10g1060 Clacu-Chr10:22538122 7.90E-191 transposed
Clacu10g1060 Clacu-Chr10:22538122 Clacu09g0605 Clacu-Chr9:5161440 2.30E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1060 K03549 - csv:101215797 1280.77