Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1148 ATGATCCAGATTCTTCAAGGGACTTTAGAGCTCTTCTGGAGATTGGCTAATCAAGTAATTGATATTAAGAATATCTTGCCTTTGTTCCATAAAGTGACTTTTTCTTATGTTCCGAGAGAGTGGAACTCATATGCGCACTCGTTAGCCAGAGATGGTTTCTTGGGTTCGAGATCTGACGCGTCGGTGATGTCGGTGCCTGCGGCTTCCGTCACCGCAGGTATATTGGAACAGGTCTCTTACCGGTTTCCAAAACATTTGATTTTATTGTGGTTTGTGATTTCCGTAACCAATGCCGATGTCCCCGACGTACCACCAGCACCTTTGGTTGCACCTACTACTCGCAATATGCCTCTACCTGCAAAATTGCCTCTTCACCAACACCATCACCGAAAATATATGTCACCACAAAGTGTGCCAGAAGCTGGACTACCGCCGTCATCTCCTCCTTACTATGGGCATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCACTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGCTTACCTCAGCCACCACTTTCCCCTATTGCAGCAGCAGACTGTTGCAAACCTGACATGGTGTTAAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAACGTATCACAGAATCCTAACTGGAAACTCTTTCTCGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGATTAAATATCTCAATGGACATTACTCCCCACGCTGGGATCAGCTTTTCTGCAGTCGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAAGTTCGTCTGGACCCTACGCTGGTTGGCGATTACCATCTTCTCAATATTACCTGGTTTAAGCCTCCACCTCCTTCTGAAGCTCCTCTAGCTTCTGCATCACCTGTAGCAGCTCCAGCATACCATTTTCCAGCCTCAACATCACTGAGTTCTCCTAGTAAAGGACACCATTCTAATCTGACACTTATTCTTGGTATTGGCGCTGGTTTTTTGTTTGTTGCCATTCTTTTTGTGTTGATAATTTGCTTATGTACATCTCATCGTGGGAAGACTGAAGCACCTCCATTAGTAACTGAAAAACGAAGGGTTGAGGACAAAGTGCCTGTGGCAGGAGCAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTAACTTATGAAGAACTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGCATATTGGGGGAGGGCGGTTTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAAGGAATTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTACATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCACGGTCCTTTGGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCTGCCCGAGGGCTTGCTTACCTTCACGAGGACTCACAACCTTGTGTGATACACAGAGACTTTAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAAGTTGCCGACTTCGGTCTTGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATACGTCGCTCCTGAGTATGCAATGACGGGCCATCTACTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTTGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCGGGACAAGAGAACCTGGTCACATGGGCGAGGCCGATTTTGAGAGACAAGGACCGGTTAGAAGAACTTGCTGATCCACGACTTGGAGGAAAGTATCCAAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGCGTCGCTCCTGAGGCTGGCCAACGTCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTACAGCGCGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGAACCAATCTAAGACAGTCGTCCACAACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTTCACGAGGGACGATGA 2367 45.37 MIQILQGTLELFWRLANQVIDIKNILPLFHKVTFSYVPREWNSYAHSLARDGFLGSRSDASVMSVPAASVTAGILEQVSYRFPKHLILLWFVISVTNADVPDVPPAPLVAPTTRNMPLPAKLPLHQHHHRKYMSPQSVPEAGLPPSSPPYYGHLITSGHPPTSSNFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPIAAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVRLDPTLVGDYHLLNITWFKPPPPSEAPLASASPVAAPAYHFPASTSLSSPSKGHHSNLTLILGIGAGFLFVAILFVLIICLCTSHRGKTEAPPLVTEKRRVEDKVPVAGAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24024521 24033673 - ClG42_10g0114800.10 Clacu10g1148 259772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1148 788 MobiDBLite consensus disorder prediction 162 182 - -
Clacu10g1148 788 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524(InterPro)
Clacu10g1148 788 FunFam Receptor-like serine/threonine-protein kinase ALE2 522 739 - -
Clacu10g1148 788 ProSiteProfiles Protein kinase domain profile. 444 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1148 788 Gene3D Transferase(Phosphotransferase) domain 1 522 744 - -
Clacu10g1148 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1148 788 SUPERFAMILY Protein kinase-like (PK-like) 423 721 IPR011009 -
Clacu10g1148 788 MobiDBLite consensus disorder prediction 729 770 - -
Clacu10g1148 788 Pfam Protein tyrosine and serine/threonine kinase 447 719 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1148 788 Gene3D Phosphorylase Kinase; domain 1 425 521 - -
Clacu10g1148 788 FunFam Receptor-like serine/threonine-protein kinase ALE2 424 521 - -
Clacu10g1148 788 Pfam Reverse transcriptase-like 14 51 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Clacu10g1148 788 PANTHER OS01G0750732 PROTEIN 211 761 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1802 Clacu-Chr5:27250579 Clacu10g1148 Clacu-Chr10:24024521 8.30E-09 dispersed
Clacu07g0259 Clacu-Chr7:2966479 Clacu10g1148 Clacu-Chr10:24024521 1.70E-87 dispersed
Clacu08g1515 Clacu-Chr8:25034093 Clacu10g1148 Clacu-Chr10:24024521 3.80E-72 dispersed
Clacu09g0068 Clacu-Chr9:676813 Clacu10g1148 Clacu-Chr10:24024521 6.30E-103 dispersed
Clacu09g0462 Clacu-Chr9:4033344 Clacu10g1148 Clacu-Chr10:24024521 1.00E-75 dispersed
Clacu10g1148 Clacu-Chr10:24024521 Clacu10g2037 Clacu-Chr10:33832738 4.80E-86 dispersed
Clacu11g2025 Clacu-Chr11:31231577 Clacu10g1148 Clacu-Chr10:24024521 2.60E-66 dispersed
Clacu10g1148 Clacu-Chr10:24024521 Clacu07g0143 Clacu-Chr7:1810688 5.40E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73879 PF00069 Pkinase 7.30E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1148 - - - 0.0