Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1172 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATTAAGAATGACCTGAAAGGGAGATTAGTGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTGTTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCCATTGTTGGAGGTCAACCTTTGCTCATCTTGGGTGTTGCGGAGCCCACGGTTATTATGTACACCTTCATGTTTAATTTTGCTAAGGAACGTCCCGAGTTGGGCCGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGTGCTTGTTCCATCATCAATAGGTTCACACGTCTGGCTGGTGAACTGTTCGGTTTGCTTATCGCGATGCTTTTCATGCAGCAAGCGATCAAAGGACTTGTGGATGAGTTTCGCATCCCAGAACGGGAAAATCCAAAATTGCTCCAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTACTCACTGCTTTAAGGAGCCGAAAAGCCCGGTCATGGCGATATGGATCAGGTTCGCTCAGAAGCTTGATAGCAGACTATGGAGTACCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATATACCTTCAAAAAGTGTCCCACAAGGAATCCCAAGGCGACTCTTCAGCCCCAATCCATGGTCTCCCGGTGCGTATGAAAATTGGACTGTTATCAAGGATATGCTTGACGTTCCAGTTTTCTATATCTGTGGAGCTTTCATCCCCGCTACGATGATTGCGGTGCTTTACTATTTTGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAGCCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCCAATGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAACTTGTAGAGACAGCACGAAGTAGTATGAGAAAGAATGCTAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTTCAATTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGCAGCTTCGATGCTCCGGTCGACGAGACAATATTTGATATCGAAAAGGAAATTGATGATTTATTGCCTGTTGAGGTGAAAGAACAACGGGTCAGTAATTTGCTTCAAGCTATAATGGTGGGAGGATGCGTTGCAGCCATGCCAGTCCTGAAAAAGATCCCGACCTCAGTTCTATGGGGTTACTTCGCTTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCATGCGACTTTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTTCAAACAGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCCGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAATACCTTCTTCCCAAGTTTTTCAAAGGGGCACATCTCCAAGACCTTGATGCTGCCGAATACGAAGAAGCACCGGCTTTACCGTTCAATCTTGCAACAGAAGCCGAGCTGGGCGCTGGAGCATCTTTCGGTGGGGATGGAGAGATTTTAGATGAGGTTATCACCCGAAGCCGCGGTGAGTTTAGGCGTATTAGCAGTCCTAAAATCACAAGCTCCACAGCAACACCAATATCTGACCGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAGAGGAGAGCACAGTCCTCGAGCTGGTGGACGAGGGACACCAGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGAAAGAGCCCTCTTAATAACACAGCATCAAAGTAA 2154 45.36 MEETFVPLRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVDEFRIPERENPKLLQFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGSLRSLIADYGVPLMVLVWTGISYIPSKSVPQGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPSIRGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQAIMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELRGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24365206 24368806 + ClG42_10g0117200.10 Clacu10g1172 259796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1172 717 MobiDBLite consensus disorder prediction 648 717 - -
Clacu10g1172 717 MobiDBLite consensus disorder prediction 664 686 - -
Clacu10g1172 717 MobiDBLite consensus disorder prediction 648 663 - -
Clacu10g1172 717 PANTHER ANION EXCHANGE PROTEIN 5 639 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Clacu10g1172 717 Pfam HCO3- transporter integral membrane domain 8 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu10g1172 717 Pfam HCO3- transporter integral membrane domain 202 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu10g1172 717 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu10g1172 717 Gene3D Helical hairpin bin 18 60 - -
Clacu10g1172 717 MobiDBLite consensus disorder prediction 698 717 - -
Clacu10g1172 717 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1368 Clacu-Chr1:25012600 Clacu10g1172 Clacu-Chr10:24365206 0.00E+00 dispersed
Clacu08g1464 Clacu-Chr8:24652074 Clacu10g1172 Clacu-Chr10:24365206 1.00E-215 dispersed
Clacu10g1172 Clacu-Chr10:24365206 Clacu07g1288 Clacu-Chr7:27678743 6.90E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1172 K24194 - csv:101205388 1394.79