Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1178 ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTTGGTTCGCAGCAATGGTAGAGTCTCAATGAGAAGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATACATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCTGGAGGACCACTCGGAGAAATTACCGATCCCATCTACCCAGGCGGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTTGTACAAGCCATTGTAACAGGAAAGGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 49.0 MAAMALSSTFTGKAVPLNAPTELSSLVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24465764 24466561 - ClG42_10g0117800.10 Clacu10g1178 259802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1178 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Clacu10g1178 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Clacu10g1178 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Clacu10g1178 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Clacu10g1178 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1889 Clacu-Chr2:32393600 Clacu10g1178 Clacu-Chr10:24465764 3.50E-134 dispersed
Clacu03g0698 Clacu-Chr3:7760660 Clacu10g1178 Clacu-Chr10:24465764 3.30E-62 dispersed
Clacu08g0197 Clacu-Chr8:3969328 Clacu10g1178 Clacu-Chr10:24465764 1.90E-55 dispersed
Clacu10g0629 Clacu-Chr10:8539886 Clacu10g1178 Clacu-Chr10:24465764 8.50E-96 dispersed
Clacu10g1178 Clacu-Chr10:24465764 Clacu11g2093 Clacu-Chr11:31705853 2.40E-42 dispersed
Clacu10g1178 Clacu-Chr10:24465764 Clacu01g2513 Clacu-Chr1:35489876 4.90E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1178 K08912 - csv:101203342 528.865