Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1180 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTCCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCCGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGACGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATCTACTGTTAACACTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAGTTTGCTGAACAACGGGGCATTGATGGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAAGCATCTTTGAGATCTTCTAAACCACATGACACGATACCTATATCTGAGACGCCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTTGATCTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCGGTGCACATGGGAACAAGCTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCGTCTAGCTCTGCTGGAGAAGCCCAGAGTCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCCCACGTTTTGCGAGCTCAGGTCCTCGATTGGTTATCACATAGTCCTACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTCACAATATACCTACGGCAGACTGAAGCTTCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATTGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAAGAAGCTTCAGATGGGTCAACAGAAAGTGGTGAAGATGACAGCCGATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGTTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGAACGTGGATGCTGGAGGTCACTCATCCTTGAATCTCGCATTGATGGAGATGGGTTTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTCGAGCTCCTTTTGAGATATCCTTCAAAAGTTAAGGATGCATCAAGTTCTGAAGACAGTGCATCCATTGATGGAGGGGCCGATAGCTTCCTGTTTAGACCCAATGCCATAGGCCCGGCTGGTCTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGACGTTTTAGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCATATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCGGATAGTAGCTGGAATCAAAAGCCAAACACCGATTTGGCCTCCTCCAGGTTTGAGATTGGTAGGATGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACACCGTCTAGCGCGTCTCTGGTTTACAGACCTGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGCGTGGCTCTCCTATTTAAAAGCTCACCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTATGGTATGGAGGTGTGTTCACCGGACAACGATTGCTGGGTGGTCGACGGGGACTGA 3072 45.18 MEAGYGGEACQLYGMGPMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQSLLNNGALMGKSDLVSTFLSNGPQASLRSSKPHDTIPISETPVQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDGSTESGEDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGNVDAGGHSSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASIDGGADSFLFRPNAIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDSSWNQKPNTDLASSRFEIGRMELKPSQQHCKLCVRKPLGCGTPSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGMEVCSPDNDCWVVDGD 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24487665 24494544 - ClG42_10g0118000.10 Clacu10g1180 259804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1180 1023 MobiDBLite consensus disorder prediction 357 373 - -
Clacu10g1180 1023 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu10g1180 1023 MobiDBLite consensus disorder prediction 220 243 - -
Clacu10g1180 1023 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Clacu10g1180 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1006 IPR044817 GO:0003677(InterPro)
Clacu10g1180 1023 SUPERFAMILY Ankyrin repeat 775 891 IPR036770 -
Clacu10g1180 1023 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Clacu10g1180 1023 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu10g1180 1023 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Clacu10g1180 1023 MobiDBLite consensus disorder prediction 345 373 - -
Clacu10g1180 1023 Gene3D - 726 898 IPR036770 -
Clacu10g1180 1023 MobiDBLite consensus disorder prediction 420 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0660 Clacu-Chr5:5487472 Clacu10g1180 Clacu-Chr10:24487665 2.90E-38 dispersed
Clacu07g0237 Clacu-Chr7:2787371 Clacu10g1180 Clacu-Chr10:24487665 4.60E-27 dispersed
Clacu10g1180 Clacu-Chr10:24487665 Clacu11g2095 Clacu-Chr11:31730563 2.20E-120 dispersed
Clacu10g1180 Clacu-Chr10:24487665 Clacu04g1220 Clacu-Chr4:26372518 5.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48487 PF03110 SBP 1.00E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1180 - - - 0.0