Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1182 ATGAGCTGCTTTAGCTGCTGCGAGGAAGATGGAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAGCAAAATACAGGAAACAATGGGGGTTATCAAAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCTGTCGAAGAACTGTCAGAAGTAACAGACAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGATGCTTAAAAATGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTCTCAAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCCAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTCGAGTATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAATTGAACGCCAAAAGTGATGTATATAGCTTCGGCGTAGTCTTGCTTGAACTTTTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGCGTTGATGCAAGGCTTGGCGGAGACTACCCCCCAAAGGCGGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTAA 1089 45.18 MSCFSCCEEDGIQKAADNGGMYAGKQNTGNNGGYQKPEAAPAVTQAVKMQPILVPTIPVEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24551980 24554287 + ClG42_10g0118200.10 Clacu10g1182 259806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1182 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1182 362 PIRSF ILK 25 353 - -
Clacu10g1182 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Clacu10g1182 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Clacu10g1182 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Clacu10g1182 362 Gene3D Phosphorylase Kinase; domain 1 33 143 - -
Clacu10g1182 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1182 362 FunFam pto-interacting protein 1 145 356 - -
Clacu10g1182 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1182 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Clacu10g1182 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Clacu10g1182 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1182 Clacu-Chr10:24551980 Clacu10g1751 Clacu-Chr10:31044514 5.00E-131 dispersed
Clacu10g1182 Clacu-Chr10:24551980 Clacu09g0462 Clacu-Chr9:4033344 7.80E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73881 PF07714 PK_Tyr_Ser-Thr 5.60E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1182 K13436 - csv:101223136 711.449