Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1187 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTAGGAGATGAGATCGGAAAAGGAGCATATGGACGAGTCTACAAGGGTCTGGACTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGCAAGAGATTGACTTACTGAAGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTGAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCGCTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCGTTGGTTGCTGTTTATATCTCTCAGGAAAGGCTTGAAGGTTTATTTGTGGAAGGACTTCTGGGTGGGGAGGAGCCTCTTTATGCTTTGTTTCTCCTGCTATATGACTTCTGGGTGGGGAGGAGCCTCTTTATGCTTTGTTTCTCCTGCTATATTGCCTCTCAAATAAGAGGTTGCATCCTAGTGAAGCTCAAGTCTCACCAAAGTCCATGGGGACAAGATAGAGCCATTTTCTGTTTCCAAACCAAGTCACTTTTGCTGTTTAGTTGCACTCTTATCAAGTGGTTTTCCCATCTACAAAGCCTCTACGTAGTTGCATTTAGAGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCCGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCACCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATTGAACTACTTACATGCGTACCTCCGTATTATGATCTACAGCCTATGCCCGCTCTCTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCAGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCGGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTACATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCTAATGGAGACAATCAAAACTCTTGCGAAAGCCCTTCGGCAGAGAAAAATGAAGTCACTGATTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTGTCATCAGATGATGCCACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGTCTAGAAGAAGATACCCTATTGGATCAGGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTACTACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGGCCATGATGAAGTGATAGTGAATGGTGAAGTGCCATTGGCAGAATTAAGGAAAGATGCTCCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAGATGAGCTGAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTGGATGATTTATTCCAACCTCTAGATAAGCACCCCGGGGATCAAGCTGCTGGAGCATCAACATCTCTATCTACTCTACAATCAAACATGGGTAATGTGCCAGTAAATGATGTTGGGAAAAATGACCTGGCCACAAAATTGAGGGCTACGATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTTCCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACCTGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGACCGGAGCAGAAAATTGTATATGTTACACAGCATGGTCTACTCCCGTTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTCTGGTAATGGGGTTTGCAGTTCCTGATCGTCCCCGAGAAGTCCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACGTTGCAAATGTTCGTCGCGTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACGCTCTACAGCTTAAATGAGGCAACTCGCTTAGCTTCCATCACAGTTGGGGCGGGATATCCAGTTGATGGTTTAACTCAACGGCCACGATCAGGTCAACTAGATCCTAGCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAAACATGGAATAGTTGATCATCACCCGTCTTCTGGACCACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGAGAACCGACGCTTTTCCATAGATGCTGATAGGCCTCAATCTAGTAATGCCACAAATGAAGCCTTGGGATCTAAACCATCAGAGCTTGCATCTTTGGATAAGGTTTTACATTTAGCAAGCAAGGAATCGTCTGGCTTGGCTTCTAAAGAACATGAAAATGTAGATAGATGGAGAACTGAGCGAATGACGAACTCTAATAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGATTTCCTACAACATTGGCAGCTACTCAACAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATGTTGACCCCACTTCTAAGATTTCTCTTAAAACGGTGGCAAAGAAGGTAGGGCCCCTGATTTCCAATGAGGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCCGGGGTACTTTCAGGTTCGGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTCGCACATGGTTTCAACTCTGAATGCTGATGTTGCAAGGGAATATCTGGCTAAGGTGGCTGATCTATTGCTCGAGTTTGCTCAAGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACGGATCCAAATTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCGTTGGTGTCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTGATGCATTTTATTATTTCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCTCGTAATTCCAGGGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTACTTGAGGATGACCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAGTTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCCCGAATCAATACGACATTGGCTGTCAACGGATTGACCCCGTTGCTTATAGCAAGGCTGGACCACCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCAAAGCAGTTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATCGAGGAACGCAGGGATGGACAACGGTCTGGAGGGCAAGTGTTGGTGAAACAAATGGCCACATCTCTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA 4482 42.48 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQERLEGLFVEGLLGGEEPLYALFLLLYDFWVGRSLFMLCFSCYIASQIRGCILVKLKSHQSPWGQDRAIFCFQTKSLLLFSCTLIKWFSHLQSLYVVAFRGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDNQNSCESPSAEKNEVTDSDFKADSRKELSSDDATDASKSQKHFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLTTSEPTEFHESHGRGHDEVIVNGEVPLAELRKDAPRKHGEKETSTTSGSRSFGFEPESQDNSFQKVSKMSIALGGDELSKFSDTPGDASLDDLFQPLDKHPGDQAAGASTSLSTLQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPSHPIFSQYEASFPMPDQPDLLKVKHGIVDHHPSSGPPEPSRASTSHSQRSDANQSENRRFSIDADRPQSSNATNEALGSKPSELASLDKVLHLASKESSGLASKEHENVDRWRTERMTNSNRTSTDRPPKLVEPASNGFPTTLAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEHDFLMAEFAEVSQRGKDNGNVDPTSKISLKTVAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDDLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24598615 24622884 + ClG42_10g0118700.10 Clacu10g1187 259811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 975 993 - -
Clacu10g1187 1493 CDD STKc_Cdc7_like 19 345 - -
Clacu10g1187 1493 Gene3D - 1144 1488 IPR011989 -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 913 927 - -
Clacu10g1187 1493 Pfam Protein kinase domain 20 127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1187 1493 Pfam Protein kinase domain 227 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 507 525 - -
Clacu10g1187 1493 Gene3D Transferase(Phosphotransferase) domain 1 211 364 - -
Clacu10g1187 1493 SMART arm_5 687 727 IPR000225 GO:0005515(InterPro)
Clacu10g1187 1493 SMART arm_5 1273 1312 IPR000225 GO:0005515(InterPro)
Clacu10g1187 1493 SMART arm_5 1227 1271 IPR000225 GO:0005515(InterPro)
Clacu10g1187 1493 SMART arm_5 772 815 IPR000225 GO:0005515(InterPro)
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 359 426 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 451 466 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 903 957 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 540 573 - -
Clacu10g1187 1493 Gene3D Transferase(Phosphotransferase) domain 1 17 135 - -
Clacu10g1187 1493 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 382 1493 IPR052441 -
Clacu10g1187 1493 Gene3D - 652 856 IPR011989 -
Clacu10g1187 1493 ProSiteProfiles Protein kinase domain profile. 20 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1187 1493 SUPERFAMILY Protein kinase-like (PK-like) 10 354 IPR011009 -
Clacu10g1187 1493 FunFam MAP3K epsilon protein kinase 1 649 857 - -
Clacu10g1187 1493 FunFam MAP3K epsilon protein kinase 1-like 1142 1488 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 451 525 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 940 956 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 971 1008 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 391 417 - -
Clacu10g1187 1493 SUPERFAMILY ARM repeat 659 853 IPR016024 -
Clacu10g1187 1493 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 467 481 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 359 390 - -
Clacu10g1187 1493 MobiDBLite consensus disorder prediction 491 506 - -
Clacu10g1187 1493 SUPERFAMILY ARM repeat 1154 1467 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1187 Clacu-Chr10:24598615 Clacu11g1352 Clacu-Chr11:23296682 6.80E-33 dispersed
Clacu10g1187 Clacu-Chr10:24598615 Clacu02g1622 Clacu-Chr2:29663842 5.70E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73882 PF00069 Pkinase 3.10E-26 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1187 - - - 0.0