Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1188 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATTTTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA 1233 44.69 MAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24625045 24629085 - ClG42_10g0118800.10 Clacu10g1188 259812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1188 410 Gene3D - 27 245 IPR027417 -
Clacu10g1188 410 SMART ultradead3 56 253 IPR014001 -
Clacu10g1188 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Clacu10g1188 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Clacu10g1188 410 SMART helicmild6 290 371 IPR001650 -
Clacu10g1188 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Clacu10g1188 410 Gene3D - 246 410 IPR027417 -
Clacu10g1188 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Clacu10g1188 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Clacu10g1188 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Clacu10g1188 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu10g1188 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Clacu10g1188 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Clacu10g1188 410 CDD SF2_C_DEAD 250 380 - -
Clacu10g1188 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0192 Clacu-Chr5:1732550 Clacu10g1188 Clacu-Chr10:24625045 6.30E-75 dispersed
Clacu07g1389 Clacu-Chr7:28715675 Clacu10g1188 Clacu-Chr10:24625045 1.00E-140 dispersed
Clacu10g1188 Clacu-Chr10:24625045 Clacu10g1392 Clacu-Chr10:27048114 7.00E-57 dispersed
Clacu10g1188 Clacu-Chr10:24625045 Clacu09g0083 Clacu-Chr9:765115 1.20E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1188 K13025 - csv:101222664 803.512