Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1213 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGACACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGA 756 44.18 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24916609 24920585 + ClG42_10g0121300.10 Clacu10g1213 259837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1213 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu10g1213 251 Coils Coil 123 143 - -
Clacu10g1213 251 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu10g1213 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Clacu10g1213 251 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 Coils Coil 149 169 - -
Clacu10g1213 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu10g1213 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu10g1213 251 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu10g1213 251 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0376 Clacu-Chr4:13905871 Clacu10g1213 Clacu-Chr10:24916609 1.70E-32 dispersed
Clacu10g1213 Clacu-Chr10:24916609 Clacu11g1657 Clacu-Chr11:27790692 1.50E-25 dispersed
Clacu10g1213 Clacu-Chr10:24916609 Clacu01g2487 Clacu-Chr1:35266813 1.10E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48488 PF01486 K-box 2.20E-17 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1213 - - - 0.0