Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1232 ATGTGTGGTGGTCCAGAACAGTCCAATTCTGCATCGACTACATCGGCAAACTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGCTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGGGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAACAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGATTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCCGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCTAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.91 MCGGPEQSNSASTTSANSPNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPGVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25139578 25141755 + ClG42_10g0123200.10 Clacu10g1232 259856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1232 725 MobiDBLite consensus disorder prediction 194 241 - -
Clacu10g1232 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Clacu10g1232 725 Gene3D - 297 360 - -
Clacu10g1232 725 MobiDBLite consensus disorder prediction 194 229 - -
Clacu10g1232 725 Pfam Ankyrin repeats (3 copies) 45 149 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Clacu10g1232 725 MobiDBLite consensus disorder prediction 401 423 - -
Clacu10g1232 725 Gene3D - 5 206 IPR036770 -
Clacu10g1232 725 MobiDBLite consensus disorder prediction 1 24 - -
Clacu10g1232 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Clacu10g1232 725 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 PRINTS Ankyrin repeat signature 116 131 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
Clacu10g1232 725 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Clacu10g1232 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Clacu10g1232 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Clacu10g1232 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Clacu10g1232 725 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Clacu10g1232 725 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1232 Clacu-Chr10:25139578 Clacu10g1697 Clacu-Chr10:30470450 1.30E-252 dispersed
Clacu10g1232 Clacu-Chr10:25139578 Clacu02g2003 Clacu-Chr2:33467843 3.10E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48489 PF12796 Ank_2 1.20E-09 CL0465 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1232 - - - 0.0