Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1236 ATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCAGTAAGTTTTGGAGATCCGAATCCTCATGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAATGAAGGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAACGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAAGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCGCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAAATGCAGAAGAGATAGGATCTAAACTTGCAAACTCTGTTCTTGATCAGGCCCCACTTCTCTCTGGATGGTTTTATGATCCATCTTCTGGGGGAAGTTTCACCCTCCCAAGTAACATCCAAACTCTTCACATTCTAGCCATCACTTCTATGGCATGTTTTACGAGTGACGCTTGA 885 43.84 MALASRIRSTIPALSKFWRSESSCTPLSRTYAATSGKNEGKVKVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSNAEEIGSKLANSVLDQAPLLSGWFYDPSSGGSFTLPSNIQTLHILAITSMACFTSDA 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25197307 25203177 - ClG42_10g0123600.10 Clacu10g1236 259860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1236 294 Gene3D - 52 144 IPR026015 -
Clacu10g1236 294 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Clacu10g1236 294 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Clacu10g1236 294 PANTHER ATP SYNTHASE DELTA CHAIN 1 227 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0407 Clacu-Chr8:5397851 Clacu10g1236 Clacu-Chr10:25197307 5.10E-09 transposed
Clacu10g1236 Clacu-Chr10:25197307 Clacu09g0415 Clacu-Chr9:3676750 1.60E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1236 K02137 - rcu:8272168 330.102