Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1262 ATGGAGTTGGGTTTGAGATTAGGAAATGATCCGCCATTTGTATTTCCTCAAAAACCTCCTTCGTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCATGAACATCAAACCCACAATCACAAACACCATAACCACCTCCTTCCCCATTCTCTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGCCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGGATGGCGAGGGAGGAGAATTCGGAAGAGGTAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAGGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCAAGACAGCAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACAGAAGTAGAGTGTGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCCCAACTTCCGTTGA 810 44.81 MELGLRLGNDPPFVFPQKPPSSSSSSHPTPLDFSLSFSSILQPPHEHQTHNHKHHNHLLPHSLNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAADGEGGEFGRGNGIVLSTYRNRNEREEKRENEEEEEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATPNFR 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25470460 25473495 - ClG42_10g0126200.10 Clacu10g1262 259886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1262 269 MobiDBLite consensus disorder prediction 128 142 - -
Clacu10g1262 269 ProSiteProfiles 'Homeobox' domain profile. 145 205 IPR001356 GO:0003677(InterPro)
Clacu10g1262 269 MobiDBLite consensus disorder prediction 19 45 - -
Clacu10g1262 269 CDD homeodomain 149 206 IPR001356 GO:0003677(InterPro)
Clacu10g1262 269 Pfam Homeodomain 149 203 IPR001356 GO:0003677(InterPro)
Clacu10g1262 269 Pfam Homeobox associated leucine zipper 205 239 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g1262 269 Coils Coil 218 238 - -
Clacu10g1262 269 Coils Coil 114 149 - -
Clacu10g1262 269 SMART HOX_1 147 209 IPR001356 GO:0003677(InterPro)
Clacu10g1262 269 MobiDBLite consensus disorder prediction 120 143 - -
Clacu10g1262 269 SMART halz 205 248 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g1262 269 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 264 IPR050762 -
Clacu10g1262 269 MobiDBLite consensus disorder prediction 1 84 - -
Clacu10g1262 269 Gene3D - 153 203 - -
Clacu10g1262 269 SUPERFAMILY Homeodomain-like 147 214 IPR009057 -
Clacu10g1262 269 MobiDBLite consensus disorder prediction 68 84 - -
Clacu10g1262 269 ProSitePatterns 'Homeobox' domain signature. 180 203 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1262 Clacu-Chr10:25470460 Clacu10g1746 Clacu-Chr10:31003534 7.60E-44 dispersed
Clacu10g1262 Clacu-Chr10:25470460 Clacu09g0379 Clacu-Chr9:3340058 1.60E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48492 PF00046 Homeodomain 1.00E-13 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1262 K09338 - csv:101208907 279.641