Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1274 ATGGGCATTGAAACAGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTTCACTCTTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCCTCACGCAAAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTGCTCCTCCCAAATTCACCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCAACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGAGGAAGGAGATACTCCGAGGGTGGAAATCGACCCAGACGACGTCGTTGCGCTGCCGTATTCCTCTGGAACAACCGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAGATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCCATCAGAGTGATCAAATGCGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGTGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGACGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAAACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAATTGGCAGCTGGTTTTCCAAATTCTAATTAA 1641 48.69 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSSRKVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELANVKIMTVDSPPEGCLWFGDLIKAEEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVERYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAGFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25579120 25583636 - ClG42_10g0127400.10 Clacu10g1274 259898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1274 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Clacu10g1274 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Clacu10g1274 546 Gene3D - 439 540 IPR045851 -
Clacu10g1274 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Clacu10g1274 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Clacu10g1274 546 SUPERFAMILY Acetyl-CoA synthetase-like 19 540 - -
Clacu10g1274 546 CDD 4CL 21 534 - -
Clacu10g1274 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
Clacu10g1274 546 Gene3D - 5 438 IPR042099 -
Clacu10g1274 546 Pfam AMP-binding enzyme 33 402 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0777 Clacu-Chr2:8611811 Clacu10g1274 Clacu-Chr10:25579120 9.50E-190 dispersed
Clacu06g1429 Clacu-Chr6:25156681 Clacu10g1274 Clacu-Chr10:25579120 2.40E-209 dispersed
Clacu09g0357 Clacu-Chr9:3086589 Clacu10g1274 Clacu-Chr10:25579120 3.40E-224 dispersed
Clacu09g0358 Clacu-Chr9:3096563 Clacu10g1274 Clacu-Chr10:25579120 5.40E-222 dispersed
Clacu10g0624 Clacu-Chr10:8457888 Clacu10g1274 Clacu-Chr10:25579120 3.30E-29 dispersed
Clacu10g1274 Clacu-Chr10:25579120 Clacu11g1547 Clacu-Chr11:26579742 5.20E-116 dispersed
Clacu10g1274 Clacu-Chr10:25579120 Clacu11g1447 Clacu-Chr11:25488769 8.10E-210 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1274 K01904 - csv:101215427 1009.59