Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g1289 | ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTTCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCCTTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCTCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAACTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA | 1308 | 46.33 | MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPSWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKPVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNNFCEKDVRPALKDIVWSWQGESECL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 25826814 | 25828121 | + | ClG42_10g0128900.10 | Clacu10g1289 | 259913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g1289 | 435 | ProSiteProfiles | NAF domain profile. | 302 | 327 | IPR018451 | GO:0007165(InterPro) | |
Clacu10g1289 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 54 | IPR017441 | GO:0005524(InterPro) | |
Clacu10g1289 | 435 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 9 | 419 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu10g1289 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu10g1289 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 284 | IPR011009 | - | |
Clacu10g1289 | 435 | Gene3D | Kinase associated domain 1, KA1 | 305 | 427 | - | - | |
Clacu10g1289 | 435 | CDD | CIPK_C | 308 | 422 | - | - | |
Clacu10g1289 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 304 | - | - | |
Clacu10g1289 | 435 | FunFam | Non-specific serine/threonine protein kinase | 9 | 299 | - | - | |
Clacu10g1289 | 435 | Pfam | NAF domain | 304 | 359 | IPR004041 | GO:0007165(InterPro) | |
Clacu10g1289 | 435 | CDD | STKc_SnRK3 | 15 | 270 | - | - | |
Clacu10g1289 | 435 | FunFam | Non-specific serine/threonine protein kinase | 302 | 426 | - | - | |
Clacu10g1289 | 435 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu10g1289 | 435 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu10g1289 | 435 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu10g1289 | 435 | FunFam | Non-specific serine/threonine protein kinase | 7 | 95 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0241 | Clacu-Chr5:2098757 | Clacu10g1289 | Clacu-Chr10:25826814 | 8.90E-51 | dispersed | |
Clacu06g1315 | Clacu-Chr6:24121893 | Clacu10g1289 | Clacu-Chr10:25826814 | 3.70E-133 | dispersed | |
Clacu06g1519 | Clacu-Chr6:26102454 | Clacu10g1289 | Clacu-Chr10:25826814 | 1.30E-23 | dispersed | |
Clacu08g1342 | Clacu-Chr8:23428592 | Clacu10g1289 | Clacu-Chr10:25826814 | 1.30E-97 | dispersed | |
Clacu10g0215 | Clacu-Chr10:2575469 | Clacu10g1289 | Clacu-Chr10:25826814 | 2.80E-51 | dispersed | |
Clacu10g1289 | Clacu-Chr10:25826814 | Clacu11g0201 | Clacu-Chr11:1722123 | 4.20E-68 | dispersed | |
Clacu11g1974 | Clacu-Chr11:30675950 | Clacu10g1289 | Clacu-Chr10:25826814 | 1.20E-28 | dispersed | |
Clacu10g1289 | Clacu-Chr10:25826814 | Clacu05g1787 | Clacu-Chr5:27004319 | 2.00E-174 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73886 | PF00069 | Pkinase | 1.80E-77 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g1289 | - | - | - | 0.0 |