Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1290 | AGAGAGAAGTCTGAAAGAGTAAGCAAAGCGGGAGCTCTGACCACCAGCTTATCGAATCCACCATCGTCAATCCCCTTATCATATTCTGGATTAAGATTTCATTTCGTTTCAAAAAGAGAGGGGAAAAAGGAGAGGAACAATAAAATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTTATTTTGAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCGTTGATCGAGAACCCGGAAACTGATCAGATTGTTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAGACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCCTTAGCAGCCAATCTAGGGGTCGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCTAAGGCGCAAAATTTCGTCCTCTGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCTTTTCTCGTATTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCTGACGTTGGAGAAATTTTTTATGGGCTATTTGTCCCTCAATTGAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTGTTTCTTCATTCAGCACTGGTGCTCTCTAGGAAAATACCCCGATCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTACATGATAGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATGCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGATTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTGGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCGTGGATCAGAAACTTTTTAACTCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTCGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGCTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCGTTCCTCTTCTGAAGTTTACAAGCAGTAAGGCCAAGATGGGACCACATGTCAACTCTACTGCGATTACAGTATTGACATGGATTATTGGCTTCCTCATCATGGCTATAAATATATACTACCTCATGAGCCGTTTCATCCACATGCTCCTTCATAACGATCTACACCTCGCAGCAGTTGTCTTCATAGGGATACTTGGATTTTCAGGCGTGGCACTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGAGCAAGGAGATCACTCATCTCTTAGCACTAACAACAGATGAAAGTAGAAGACTGAGCAACGAGCCGAGTAAGACATCGGGATATAGTCTCCCGAACGAAGATATAGTAAGCATGCAGTTGCCTCAACGAGTTAGAACTGCCAATGATGTAAACTGA | 1782 | 42.87 | REKSERVSKAGALTTSLSNPPSSIPLSYSGLRFHFVSKREGKKERNNKMAAGGSGSGQPQFILRAGDESFSHAPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKAQNFVLWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNAPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSKAKMGPHVNSTAITVLTWIIGFLIMAINIYYLMSRFIHMLLHNDLHLAAVVFIGILGFSGVALYLAGIAYLVLRKSKEITHLLALTTDESRRLSNEPSKTSGYSLPNEDIVSMQLPQRVRTANDVN | 593 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 25843528 | 25849120 | + | ClG42_10g0129000.10 | Clacu10g1290 | 259914 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1290 | 593 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 415 | 432 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 277 | 300 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 202 | 221 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 227 | 248 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 174 | 200 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 387 | 406 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PRINTS | Natural resistance-associated macrophage protein signature | 447 | 466 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | Hamap | Divalent metal cation transporter MntH [mntH]. | 80 | 503 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | NCBIfam | Nramp family divalent metal transporter | 100 | 468 | - | - | |
| Clacu10g1290 | 593 | Pfam | Natural resistance-associated macrophage protein-like | 115 | 477 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 80 | 547 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu10g1290 | 593 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 94 | 471 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0851 | Clacu-Chr2:10156911 | Clacu10g1290 | Clacu-Chr10:25843528 | 2.70E-90 | dispersed | |
| Clacu08g0739 | Clacu-Chr8:17245945 | Clacu10g1290 | Clacu-Chr10:25843528 | 6.60E-167 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1290 | K21398 | - | csv:101209649 | 1002.66 |