Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1292 ATGCCGATCGATACCTCTGCAGTTTCCGGCCAAATTGTTTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACTTAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTATGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAATGTCATGACCGCGGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATCGGCTCTGTCTACATGAACCCTAACCGAAGCCCCGACGTGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTATTGTTATGCAAAGACAGTGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAAAGGGGTGGATCTTGTGGTCGTAAATCCAATGTTGGTATTGGGGCCTTTGTTGCAAGAAAGTGTGAATGCAAGTGTGGTTCATATAATGAAATATTTAACAGGATCAGCAAAAACATATGTAAATGCAGTTCAAGGTTATGTTGATGTCAAGGATGTTGCAAAAGCCCATGTTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTGCAAGCTTGTTCCCTCAGTATCCTCTCCCTACCAAGTAA 828 44.93 MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGSVYMNPNRSPDVVVDESCWSDLEFCKNTKNWYCYAKTVAEQAAWEVAKEKGVDLVVVNPMLVLGPLLQESVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILASLFPQYPLPTK 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25861201 25862396 - ClG42_10g0129200.10 Clacu10g1292 259916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1292 275 Gene3D - 3 275 - -
Clacu10g1292 275 FunFam Cinnamoyl-CoA reductase 1 6 275 - -
Clacu10g1292 275 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Clacu10g1292 275 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 268 IPR050425 GO:0016616(PANTHER)
Clacu10g1292 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 273 IPR036291 -
Clacu10g1292 275 CDD FR_SDR_e 13 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1292 Clacu-Chr10:25861201 Clacu10g1294 Clacu-Chr10:25869989 3.00E-152 dispersed
Clacu10g1292 Clacu-Chr10:25861201 Clacu10g1293 Clacu-Chr10:25865357 1.00E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1292 K09753 - csv:116401668 516.538