Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1294 | ATGCCGATTGATACCTCTGCAGTCTCCGGCCAAATTGTGTGTGTCACCGGCGCCGGCGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACCGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGATTGTCTTTGTTTAGTGCTGATCTCCTTGATTTTGACAGCCTCAAAGCAGCCATTATGGGTTGTCATGGTGTTTTCCACACTGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAACGTCATGACCGCTGCCGCTGAAGCAAACGTCCGACGAGTGGTGTTCACGTCATCGATCGGCACCGTCTATATGAACCCTAACCGAAGCCCCGACGCGGTAGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTACTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTTGATCTTGTAGTTGTAAATCCAATGTTGGTGTTGGGACCTTTGTTGCAAGAAGGTGTAAATGCTAGTGTAGTTCACATAATGAAGTATTTAACGGGATCAGCAAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATATTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTAAAAACTTCTTCCCTCAATATCCTCTTCCTACCAAGTGTTCTGATGAGATAAATCCCAGAAAGAAACCTTACAAGTACACAGTTGAGAAGCTAAAGTCATTAGGAATGGAATTCACACCAATCAAACAATGCATATATGAAACTGTAAAGAGCCTACAAGACAAGGGTCATCTTCCACCTCCTTCCCAACTTCAACATTATTGA | 993 | 43.61 | MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHILVYETPSASGRYICVESMLHRGELVDILKNFFPQYPLPTKCSDEINPRKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQDKGHLPPPSQLQHY | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 25869989 | 25876733 | - | ClG42_10g0129400.10 | Clacu10g1294 | 259918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1294 | 330 | FunFam | Cinnamoyl-CoA reductase 1 | 4 | 330 | - | - | |
| Clacu10g1294 | 330 | CDD | FR_SDR_e | 13 | 298 | - | - | |
| Clacu10g1294 | 330 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 6 | 315 | IPR036291 | - | |
| Clacu10g1294 | 330 | Gene3D | - | 3 | 329 | - | - | |
| Clacu10g1294 | 330 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 314 | IPR050425 | GO:0016616(PANTHER) | |
| Clacu10g1294 | 330 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu09g0332 | Clacu-Chr9:2828996 | Clacu10g1294 | Clacu-Chr10:25869989 | 6.00E-147 | dispersed | |
| Clacu10g0753 | Clacu-Chr10:10960094 | Clacu10g1294 | Clacu-Chr10:25869989 | 1.10E-63 | dispersed | |
| Clacu10g1292 | Clacu-Chr10:25861201 | Clacu10g1294 | Clacu-Chr10:25869989 | 3.00E-152 | dispersed | |
| Clacu10g1294 | Clacu-Chr10:25869989 | Clacu11g2087 | Clacu-Chr11:31671316 | 3.90E-74 | dispersed | |
| Clacu10g1293 | Clacu-Chr10:25865357 | Clacu10g1294 | Clacu-Chr10:25869989 | 4.40E-187 | tandem | |
| Clacu10g1294 | Clacu-Chr10:25869989 | Clacu10g1295 | Clacu-Chr10:25887556 | 3.90E-159 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1294 | K09753 | - | csv:116401668 | 625.165 |