Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1295 ATGCCCCTCGCCGCCGCCGTAGCTTCCGGTCAAATTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTGAAGCTTCTTCTTCAAAAGGGTTACACCGTTAGAGGCACTGTAAGAAACCCAGATGATCGGAAGAATGATCATTTGAAAGAGTTAGATGGAGCTGAGGAAAGGTTGACGCTGTACAGTGCTGATCTACTTGATTTCGACAGTCTTAAAGCCGCCATTATCGGTTGTGATGGTGTTTTCCACACGGCGTCTCCGGTGACTGACGACCCCGAAAAGGTGGAGCAGGCAATAATTGGGACGAAAAATGTTATAATGGCGGCGGCGGAGGCCAAGGTCCGGCGAGTGGTGTTCACATCGTCCATTGGAACTATACACATGAACCCTAATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAATACAAAGAATTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAATGGCAGAGGAGAAAGGAGTGGATTTAGTAGTGGTGAATCCAATGTTGGTGCTTGGACCATTATTACAACAAACAATCAATGCAAGTGTAGCTCATATAATGAAGTACTTGACTGGCTCAGTCAAGACATACGTCAATGCAGTTCAAGGATACGTTCATGTTAAGGATGTTGCAAAAGCTCACTTGTTGGTGTATGAGACTTCCTCTGCATTTGGTAGATATATTTGTGTTGAAACTATGCTTCATCGTGGAGAATTGGTTGAAATTTTGGCTAAATTCTTTCCTGAGTATCCCATTCCTACCAAGTGCTCTGACCAGGTGAACCCTAAGAAGAAACCTTACAAATTTAGTGTAAAAAAGCTGAAGGACTTGGGAATGGATCAATTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAAAGCCTTCAAGAGAAGGGTCATCTTCCACTTCCTTAA 978 44.79 MPLAAAVASGQIVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNPDDRKNDHLKELDGAEERLTLYSADLLDFDSLKAAIIGCDGVFHTASPVTDDPEKVEQAIIGTKNVIMAAAEAKVRRVVFTSSIGTIHMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVAHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLVYETSSAFGRYICVETMLHRGELVEILAKFFPEYPIPTKCSDQVNPKKKPYKFSVKKLKDLGMDQFIPVKQCIYETVKSLQEKGHLPLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25887556 25894510 - ClG42_10g0129500.10 Clacu10g1295 259919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1295 325 FunFam Cinnamoyl-CoA reductase 1 4 325 - -
Clacu10g1295 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Clacu10g1295 325 CDD FR_SDR_e 13 298 - -
Clacu10g1295 325 Gene3D - 4 325 - -
Clacu10g1295 325 Pfam NAD dependent epimerase/dehydratase family 13 241 IPR001509 -
Clacu10g1295 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 317 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0611 Clacu-Chr10:8264515 Clacu10g1295 Clacu-Chr10:25887556 1.70E-35 dispersed
Clacu10g1293 Clacu-Chr10:25865357 Clacu10g1295 Clacu-Chr10:25887556 1.60E-157 dispersed
Clacu10g1295 Clacu-Chr10:25887556 Clacu11g2087 Clacu-Chr11:31671316 6.30E-69 dispersed
Clacu10g1294 Clacu-Chr10:25869989 Clacu10g1295 Clacu-Chr10:25887556 3.90E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1295 K09753 - csv:101219069 612.068