Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1298 ATGGCTGGAGGAACTCCCGATGGCCACTCCTCCGGCAATACGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGATGAAGCGGCGGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAACTTCTTGGATGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGGGATGCTCAGTTGACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCGGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGACGATGTGCCCATGACAGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCGCTTAGAGAACATGTTACCATGGATGCAGTTAGACGCTTTATAGGGAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTATATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCTGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATCGGGGGTGTAGTGACCCGGCGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACGATATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTGTTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTCGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCGGCTGTAGGACTAACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTGGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGCATCCATGAAGCAATGGAGCAACAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCAGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCCCAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGCTGCGGAAATACATAACTTACTCTAAGTTAAATGTTTTCCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCATGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTGCTCCGAGAGCTTGTGAAGAATGCACTCCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTACCCACATCAATGTAAAATTGGAAGACCTACAAAGCAAGGCACAGGATCACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTTCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA 2838 43.59 MAGGTPDGHSSGNTPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQLTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSINESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25935675 25941563 + ClG42_10g0129800.10 Clacu10g1298 259922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1298 945 MobiDBLite consensus disorder prediction 7 43 - -
Clacu10g1298 945 Gene3D - 221 325 - -
Clacu10g1298 945 Pfam MCM P-loop domain 496 718 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 CDD MCM2 511 838 - -
Clacu10g1298 945 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Clacu10g1298 945 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 220 905 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER)
Clacu10g1298 945 FunFam DNA helicase 221 325 - -
Clacu10g1298 945 FunFam DNA helicase 488 862 - -
Clacu10g1298 945 MobiDBLite consensus disorder prediction 1 69 - -
Clacu10g1298 945 MobiDBLite consensus disorder prediction 116 210 - -
Clacu10g1298 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 842 IPR027417 -
Clacu10g1298 945 Pfam MCM AAA-lid domain 755 839 IPR041562 -
Clacu10g1298 945 Gene3D - 356 406 - -
Clacu10g1298 945 Pfam MCM N-terminal domain 229 322 IPR027925 -
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 688 696 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 SMART mcm 325 840 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 MobiDBLite consensus disorder prediction 731 745 - -
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 MobiDBLite consensus disorder prediction 116 159 - -
Clacu10g1298 945 Pfam Mini-chromosome maintenance protein 2 45 168 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Clacu10g1298 945 ProSiteProfiles MCM family domain profile. 508 714 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu10g1298 945 Gene3D - 488 862 IPR027417 -
Clacu10g1298 945 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Clacu10g1298 945 MobiDBLite consensus disorder prediction 723 748 - -
Clacu10g1298 945 Pfam MCM OB domain 328 455 IPR033762 -
Clacu10g1298 945 MobiDBLite consensus disorder prediction 176 191 - -
Clacu10g1298 945 FunFam DNA helicase 356 406 - -
Clacu10g1298 945 Gene3D - 329 454 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1298 K02540 - - csv:101219546 1762.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0515 Clacu-Chr9:4416247 Clacu10g1298 Clacu-Chr10:25935675 2.10E-88 dispersed
Clacu09g1643 Clacu-Chr9:28958514 Clacu10g1298 Clacu-Chr10:25935675 2.40E-67 dispersed
Clacu10g1298 Clacu-Chr10:25935675 Clacu11g0494 Clacu-Chr11:4668861 1.20E-91 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G14700 67.0 1.2e-265 912.9
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G12620 69.3 6.3e-275 943.7
Clacu08g1734 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Clacu07g0481 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Clacu06g0361 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 9.1e-172 600.5
Clacu11g0941 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.7 1.9e-93 339.3
Clacu09g2284 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.8e-246 847.8
Clacu10g1298 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Clacu01g2525 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Clacu02g0508 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Clacu11g0494 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Clacu01g2678 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Clacu09g0515 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Clacu02g2016 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.3e-163 571.2
Clacu02g2016 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.5e-143 505.8
Clacu09g0874 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.1e-257 885.9
Clacu10g2027 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Clacu09g1643 . 9 629 Core DNA Replication Machinery Family AT2G14050 78.9 2.4e-285 978.0
Clacu02g1224 . 1908 2318 Core DNA Replication Machinery Family AT2G20980 56.4 1.1e-118 423.7
Clacu09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT1G19080 69.8 2.1e-61 232.3
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT3G55490 69.8 2.1e-61 232.3
Clacu05g0167 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Clacu02g1274 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Clacu04g1224 . 151 773 Core DNA Replication Machinery Family AT1G67630 60.7 4.3e-215 744.6
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu08g0161 . 48 491 Core DNA Replication Machinery Family AT5G41880 65.0 1.3e-176 616.3
Clacu01g1579 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Clacu10g1736 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu01g0553 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.2e-37 151.4
Clacu02g2254 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Clacu09g2081 . 7 2057 Core DNA Replication Machinery Family AT1G08260 68.7 0.0e+00 2819.3
Clacu02g2254 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Clacu09g2081 . 29 2148 Core DNA Replication Machinery Family AT2G27120 65.8 0.0e+00 2773.0
Clacu04g1335 . 638 1059 Core DNA Replication Machinery Family AT5G22110 67.0 8.2e-169 590.5
Clacu02g2304 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Clacu10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.7e-173 604.4
Clacu04g0492 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Clacu11g1775 . 66 384 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Clacu08g0732 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Clacu11g0299 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.7e-245 843.6
Clacu10g0107 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Clacu06g1663 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.8e-249 856.3
Clacu10g0107 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.2 8.7e-227 783.9
Clacu06g1663 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.8e-241 830.1
Clacu10g0107 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.2e-224 775.8
Clacu03g1825 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Clacu05g0312 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 8.9e-298 1020.0
Clacu07g1578 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Clacu02g2212 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.2e-288 986.5
Clacu02g2212 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.8e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35