Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1312 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGAACATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTCTTCACGCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCGTGGCACCTTACAATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTACAGGTACGGCATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAATTCATATACAATGGAATCCATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAATTCGCAAGGCCTAA 1083 43.12 MMAFSFVSAWNKRRRQKKSSQLEHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLQSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRNSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQIRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26159667 26164607 + ClG42_10g0131200.10 Clacu10g1312 259936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1312 360 Pfam Protein kinase domain 73 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1312 360 FunFam serine/threonine-protein kinase PBS1-like 38 148 - -
Clacu10g1312 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Clacu10g1312 360 FunFam receptor-like serine/threonine-protein kinase NCRK 149 359 - -
Clacu10g1312 360 SUPERFAMILY Protein kinase-like (PK-like) 57 353 IPR011009 -
Clacu10g1312 360 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Clacu10g1312 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Clacu10g1312 360 PIRSF ILK 40 359 - -
Clacu10g1312 360 CDD STKc_IRAK 76 348 - -
Clacu10g1312 360 PANTHER OS01G0750732 PROTEIN 12 351 IPR050885 -
Clacu10g1312 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1312 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1312 Clacu-Chr10:26159667 Clacu07g0143 Clacu-Chr7:1810688 4.30E-74 dispersed
Clacu10g1312 Clacu-Chr10:26159667 Clacu10g1313 Clacu-Chr10:26166444 6.20E-65 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73887 PF00069 Pkinase 9.90E-51 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1312 - - - 0.0