Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1313 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTGAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCCAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTCGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCACTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAGTGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAATAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTATTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTATATATGGGTGACAGCATTGGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTGATGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCTAACGGCTTCTATTCGAAACCCTTTCTTTAATGCTGACGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATTTATCTTGATTGGAAGAGAAGGCTTCGTATCGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACGTCTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTACGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACGAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTAGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2835 41.27 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDRLFKAKHFHFSKNQLSGTIPPELFHSEMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGSVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSIAPEWFSNLQSLTTLIVEYGSIRGNLPEGIFSLPRIQQVKLKNNAFSGTLYMGDSIGQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNYCQLQQQQAKPYTTSLVNCGSKSCPDDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNLTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26166444 26173170 - ClG42_10g0131300.10 Clacu10g1313 259937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1313 944 ProSiteProfiles Protein kinase domain profile. 625 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1313 944 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
Clacu10g1313 944 CDD STKc_IRAK 631 899 - -
Clacu10g1313 944 SMART LRR_typ_2 289 313 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 139 162 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 361 385 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 163 187 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 90 115 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 242 265 IPR003591 -
Clacu10g1313 944 SMART LRR_typ_2 314 338 IPR003591 -
Clacu10g1313 944 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Clacu10g1313 944 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Clacu10g1313 944 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Clacu10g1313 944 Pfam Leucine Rich Repeat 291 314 IPR001611 GO:0005515(InterPro)
Clacu10g1313 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 914 - -
Clacu10g1313 944 SMART serkin_6 625 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1313 944 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Clacu10g1313 944 Gene3D Phosphorylase Kinase; domain 1 597 700 - -
Clacu10g1313 944 PANTHER RECEPTOR-LIKE PROTEIN 55 43 897 - -
Clacu10g1313 944 SUPERFAMILY L domain-like 39 302 - -
Clacu10g1313 944 SUPERFAMILY Protein kinase-like (PK-like) 610 911 IPR011009 -
Clacu10g1313 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1313 944 SUPERFAMILY L domain-like 285 394 - -
Clacu10g1313 944 FunFam Leucine-rich repeat protein kinase family protein 595 700 - -
Clacu10g1313 944 Gene3D Transferase(Phosphotransferase) domain 1 701 926 - -
Clacu10g1313 944 Pfam Protein tyrosine and serine/threonine kinase 627 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1313 944 FunFam Leucine-rich repeat family protein 29 185 - -
Clacu10g1313 944 MobiDBLite consensus disorder prediction 907 944 - -
Clacu10g1313 944 FunFam Predicted protein 188 409 - -
Clacu10g1313 944 Gene3D Ribonuclease Inhibitor 190 414 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0002 Clacu-Chr2:74882 Clacu10g1313 Clacu-Chr10:26166444 5.10E-185 dispersed
Clacu04g0672 Clacu-Chr4:20638022 Clacu10g1313 Clacu-Chr10:26166444 8.40E-94 dispersed
Clacu10g1313 Clacu-Chr10:26166444 Clacu10g2252 Clacu-Chr10:35437174 0.00E+00 dispersed
Clacu10g1312 Clacu-Chr10:26159667 Clacu10g1313 Clacu-Chr10:26166444 6.20E-65 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73888 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1313 - - - 0.0