Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1337 ATGGAGTTGGTAAGCGAGAAGAGGGATTTTGATTCTTCAAACGACAACAAGAAGCTCAACTCTGCTCAACCACTTCTTGATTCTTCTTATCAACCCTCAGCCGCTGATGACACAAATGCCAAAGAAGCTGAAGAGTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACGTCATATGAGGACAACATAAAAAAGATCGTGGACTTCAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCTTCTTTGCCAAGCCCAACAGATCTGCATCTCTTTAAGGAAGGAATCCGTCCACTCTGGGAGGATTCTGCGAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGGCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGCGACCAACTTGATTTTGGCGATAACATATGTGGTGCCGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGCGTCTGGAACCGCAATGCATCTGATCATCAGGCGGTGATGGGTCTGCGAGATTCAATCAAAAGGCACTTAAAGCTCCCGCATGGGTATGTAATGGAATACAAACCCCACGATGCGTCTCTGCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGGACAAAACTTAGATCCATATTGCCAGCTGCTAGACCTAGGCTATTTGTTTGTTAA 768 45.18 MELVSEKRDFDSSNDNKKLNSAQPLLDSSYQPSAADDTNAKEAEELSERVARDLKDGLHPLKHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRGTKLRSILPAARPRLFVC 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26369838 26379962 + ClG42_10g0133700.10 Clacu10g1337 259961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1337 255 FunFam Eukaryotic translation initiation factor NCBP 30 231 - -
Clacu10g1337 255 MobiDBLite consensus disorder prediction 1 15 - -
Clacu10g1337 255 Pfam Eukaryotic initiation factor 4E 60 218 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu10g1337 255 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 35 231 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Clacu10g1337 255 SUPERFAMILY eIF4e-like 36 234 IPR023398 -
Clacu10g1337 255 MobiDBLite consensus disorder prediction 1 44 - -
Clacu10g1337 255 Gene3D RNA Cap, Translation Initiation Factor Eif4e 30 231 IPR023398 -
Clacu10g1337 255 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Clacu10g1337 255 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0734 Clacu-Chr6:8618825 Clacu10g1337 Clacu-Chr10:26369838 4.20E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1337 K03259 - csv:101204290 479.174