Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1344 ATGAACGATCTTCTTTCGGATTCGTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGATCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCAGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATTGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCAGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCATGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCGCAAATTTACGAGAAATTAGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCAAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATTTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAAAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2685 43.02 MNDLLSDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKIKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYQEVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLQFLWLKGYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCMFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKLGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDFEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26467118 26486628 - ClG42_10g0134400.10 Clacu10g1344 259968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1344 894 Coils Coil 36 70 - -
Clacu10g1344 894 SMART tSNARE_6 201 268 IPR000727 -
Clacu10g1344 894 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Clacu10g1344 894 SUPERFAMILY t-snare proteins 36 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu10g1344 894 CDD SNARE_syntaxin1-like 205 267 - -
Clacu10g1344 894 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu10g1344 894 Gene3D - 36 164 - -
Clacu10g1344 894 MobiDBLite consensus disorder prediction 1 34 - -
Clacu10g1344 894 FunFam Syntaxin 132 199 299 - -
Clacu10g1344 894 Pfam mTERF 533 841 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 FunFam Transcription termination factor mterf4, chloroplastic 497 634 - -
Clacu10g1344 894 FunFam Syntaxin 132 31 160 - -
Clacu10g1344 894 PANTHER CGI-12 PROTEIN-RELATED 473 573 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 Coils Coil 209 229 - -
Clacu10g1344 894 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Clacu10g1344 894 Gene3D - 198 299 - -
Clacu10g1344 894 Pfam SNARE domain 242 294 IPR000727 -
Clacu10g1344 894 Gene3D Transcription termination factor 3, mitochondrial 637 850 IPR038538 -
Clacu10g1344 894 Gene3D Transcription termination factor 3, mitochondrial 499 636 IPR038538 -
Clacu10g1344 894 SMART mt_12 547 578 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 619 650 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 763 794 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 655 686 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 511 542 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 691 723 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 583 614 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 728 758 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 SMART mt_12 795 826 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu10g1344 894 FunFam Transcription termination factor MTERF4, chloroplastic 635 849 - -
Clacu10g1344 894 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Clacu10g1344 894 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0539 Clacu-Chr2:5126598 Clacu10g1344 Clacu-Chr10:26467118 1.10E-14 dispersed
Clacu02g0873 Clacu-Chr2:10600588 Clacu10g1344 Clacu-Chr10:26467118 1.70E-48 dispersed
Clacu02g0875 Clacu-Chr2:10639972 Clacu10g1344 Clacu-Chr10:26467118 1.80E-84 dispersed
Clacu03g0056 Clacu-Chr3:720867 Clacu10g1344 Clacu-Chr10:26467118 1.90E-08 dispersed
Clacu03g0656 Clacu-Chr3:7207986 Clacu10g1344 Clacu-Chr10:26467118 2.50E-11 dispersed
Clacu09g2223 Clacu-Chr9:37018693 Clacu10g1344 Clacu-Chr10:26467118 4.00E-49 dispersed
Clacu10g1344 Clacu-Chr10:26467118 Clacu10g1804 Clacu-Chr10:31661178 1.40E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48497 PF02536 mTERF 2.90E-104 No_clan Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1344 K15031 - csv:101203314 967.992